Gene
| Gene Model ID | pfu_aug2.0_125.1_16966 |
|---|---|
| Locus | scaffold125.1 : 103910 ... 126505 : - |
| To GenomeBrowser | scaffold125.1:103910..126505 |
| Genes list of scaffold | scaffold125.1 |
| Synonym | pfu_aug1.0_17794.1_47129 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx41 | GO:0003676 GO:0004386 GO:0005524 GO:0008152 GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_125.1_16966.t1 | 3 | 1 | DEAD | 40 | 79 | 3.0e-24 | 85.3 | 2.3 | 5700.0 | -3.4 |
| pfu_aug2.0_125.1_16966.t1 | 3 | 2 | DEAD | 151 | 269 | 3.0e-24 | 85.3 | 8.7e-26 | 2.2e-22 | 79.3 |
| pfu_aug2.0_125.1_16966.t1 | 2 | 1 | Helicase_C | 177 | 197 | 1.5e-28 | 98.4 | 2.6 | 6400.0 | -2.9 |
| pfu_aug2.0_125.1_16966.t1 | 3 | 3 | DEAD | 329 | 374 | 3.0e-24 | 85.3 | 0.016 | 41.0 | 3.6 |
| pfu_aug2.0_125.1_16966.t1 | 2 | 2 | Helicase_C | 336 | 412 | 1.5e-28 | 98.4 | 3.0e-31 | 7.4e-28 | 96.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_125.1_16966.t1 | gi|242016149|ref|XP_002428698.1| | predicted protein [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_125.1_16966.t1 | gi|585660701|ref|XP_006816434.1| | PREDICTED: probable ATP-dependent RNA helicase DDX41 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_125.1_16966.t1 | gi|676468889|ref|XP_009058354.1| | hypothetical protein LOTGIDRAFT_163615 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_125.1_16966.t1 | gi|524866731|ref|XP_005090184.1| | PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_125.1_16966.t1 | gi|675862500|ref|XP_009016810.1| | hypothetical protein HELRODRAFT_78123, partial [Helobdella robusta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_125.1_16966.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_125.1_16966.t1 atgtcggcagagttaaagtcctacagaaagagaattttggaaaaagagagtaaagatgaatcatctgatgatgatgacta tgttccctatgtacctctcaaacagaggaaaaagatgcagttacaagagattgagaaaaaacttggtagagcaagtgcac taaaagaggaggagcttcagagagaaacaaggaaagagactgccagagagaaattattaaaggaagaagaaaggatctta gagagtgtcgctgaaaagaaagctttgatgggtgttgctgagctggctaagggcattcagtatgaagatccaatcaaaac aggatggagaccgcccagatacattcgaagcatgccagaggccacactntatggcctgagaccccagacaattttgagac cctcaggatggaaacaatagaacaagtataatcataatctaagtataaatttgcgtgagcttgctagacaaacccatgag attctattgttcttgtgtcaatgcttagcgagtgatggattcccagaaataaaatgtggtctatgtataggtggtgtacc aatgaaggaacaactgaatgccatcaagaggggtatacatatagtggtagccacaccagggcgcctaatgcttatgctga ataagaagatgataacgttagatgtttgtcgattcctggccatggacgaggccgatagattgattgatctgggatttgaa gaggacatcagaactatcttctcatatttcaagggtcagaggcagacgttactgttctcggccaccatgcctaagaaaat ccagaactttgcccgtagtgcattggtcaaacctgtgacagtcaacgtaggtcgtgcaggagctgctagtcttgatatta aacaggaagtggagtacgtcaaacaggaagctaagatggtgtatatactggaatgtctacagaagacagcgccacctgtg ctgatatttgccgagaagaaacaagatgttgatgccatacatgaatacttgttactgaagggagtagatgctgtggccat tcatggaggaaaagatcaagaagaaagaacgagatctgtcagtcagtttaagaatggagagaaggatgtgttggtagcta cagatgtcgcttctaaaggtctcgacttccctgaaatccaacatgttatcaactatgatatgcctgaagatatagaaaac tatgtgcatagaataggaagaacgggacgatgtggtaaaactggagtggccactacattcataaacaaaggagtggatga atcgattctgttggatctgaaacatttactgatagaggccaaacaacttgttcctccattccttgccaagatgcagtctg acagtgaaaaatacctcaacatcgggggtgaagtgggatgctcatactgcggtggtttgggtcatcgaatcgcagactgt ccgaaactggaggccattcagaccaagcaggcgcagagcatcgggcgcagagactatttagcgcacagcagcgcggatta ctga |
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Protein
| Protein ID | pfu_aug2.0_125.1_16966.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_125.1_16966.t1 MSAELKSYRKRILEKESKDESSDDDDYVPYVPLKQRKKMQLQEIEKKLGRASALKEEELQRETRKETAREKLLKEEERIL ESVAEKKALMGVAELAKGIQYEDPIKTGWRPPRYIRSMPEATXYGLRPQTILRPSGWKQXNKYNHNLSINLRELARQTHE ILLFLCQCLASDGFPEIKCGLCIGGVPMKEQLNAIKRGIHIVVATPGRLMLMLNKKMITLDVCRFLAMDEADRLIDLGFE EDIRTIFSYFKGQRQTLLFSATMPKKIQNFARSALVKPVTVNVGRAGAASLDIKQEVEYVKQEAKMVYILECLQKTAPPV LIFAEKKQDVDAIHEYLLLKGVDAVAIHGGKDQEERTRSVSQFKNGEKDVLVATDVASKGLDFPEIQHVINYDMPEDIEN YVHRIGRTGRCGKTGVATTFINKGVDESILLDLKHLLIEAKQLVPPFLAKMQSDSEKYLNIGGEVGCSYCGGLGHRIADC PKLEAIQTKQAQSIGRRDYLAHSSADY |
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