Gene
| Gene Model ID | pfu_aug2.0_125.1_16977 |
|---|---|
| Locus | scaffold125.1 : 398971 ... 411514 : + |
| To GenomeBrowser | scaffold125.1:398971..411514 |
| Genes list of scaffold | scaffold125.1 |
| Synonym | pfu_aug1.0_51164.1_48752 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-27a | GO:0001750 GO:0003924 GO:0005525 GO:0005764 GO:0005794 GO:0006605 GO:0006904 GO:0007596 GO:0009306 GO:0010628 GO:0016324 GO:0019003 GO:0019882 GO:0019904 GO:0030318 GO:0030425 GO:0030667 GO:0031489 GO:0032402 GO:0032482 GO:0032585 GO:0033093 GO:0036257 GO:0042470 GO:0043316 GO:0043320 GO:0050766 GO:0070062 GO:0070382 GO:0071985 GO:0097278 GO:1903307 GO:1903428 GO:1903435 GO:1990182 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_125.1_16977.t1 | 1 | 1 | Arf | 24 | 195 | 1.1e-12 | 47.5 | 8.0e-16 | 2.0e-12 | 46.7 |
| pfu_aug2.0_125.1_16977.t1 | 1 | 1 | Ras | 26 | 196 | 0.0 | 180.3 | 0.0 | 0.0 | 180.0 |
| pfu_aug2.0_125.1_16977.t1 | 1 | 1 | Miro | 26 | 151 | 1.6e-16 | 60.9 | 9.0e-20 | 2.2e-16 | 60.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_125.1_16977.t1 | gi|676482752|ref|XP_009062804.1| | hypothetical protein LOTGIDRAFT_220613 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_125.1_16977.t1 | gi|71834648|ref|NP_001025428.1| | ras-related protein Rab-27A [Danio rerio] | 0.0 |
| pfu_aug2.0_125.1_16977.t1 | gi|597776503|ref|XP_007251931.1| | PREDICTED: ras-related protein Rab-27A [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_125.1_16977.t1 | gi|149691929|ref|XP_001501079.1| | PREDICTED: ras-related protein Rab-27A isoform X1 [Equus caballus] | 0.0 |
| pfu_aug2.0_125.1_16977.t1 | gi|664767399|ref|XP_008541203.1| | PREDICTED: ras-related protein Rab-27A [Equus przewalskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_125.1_16977.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_125.1_16977.t1 atgggagagactgttccctcccctaacggcagccccactcatggtacaaacatggcagattatgactatctcatcaaatt tctcgccttaggtgattctggtgttggtaaaaccagctttctgtaccaatacacagacaaacagttcactggtaacttta tatctacagtgggtatagactttaaagagaagagagtggttcatagagtacctggtttggatggatctgtaggaagaagt cacaggatacacttacaactctgggatactgctggacaggaaaggtttcggagtcttaccacagcctttttccgtgatgc tatgggattcttattactgtttgacttgaccaatgagcagtcatttattaacattcgtaactggctgtcacagctacaaa ctcacgcttccttagagaacccagatatagtactgtgtggtaacaagtcagacttagaggatacaagggtggtgtcagaa gaaagggccagggaagtgtccgagaaatatgggcttccatactttgaaaccagtgcagcatcagggcagaatgtagccaa ggcagtggagtgcctactggacatggtaatgatgagaatggccaggtctatagacgtaagccagctccccggcatgagga acggtcataccacaaggaagttcgatagtgaagagactagcggaaactccggttgtgcttgttga |
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Protein
| Protein ID | pfu_aug2.0_125.1_16977.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_125.1_16977.t1 MGETVPSPNGSPTHGTNMADYDYLIKFLALGDSGVGKTSFLYQYTDKQFTGNFISTVGIDFKEKRVVHRVPGLDGSVGRS HRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFINIRNWLSQLQTHASLENPDIVLCGNKSDLEDTRVVSE ERAREVSEKYGLPYFETSAASGQNVAKAVECLLDMVMMRMARSIDVSQLPGMRNGHTTRKFDSEETSGNSGCAC |
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