Gene
| Gene Model ID | pfu_aug2.0_1252.1_08282 |
|---|---|
| Locus | scaffold1252.1 : 3796 ... 19991 : + |
| To GenomeBrowser | scaffold1252.1:3796..19991 |
| Genes list of scaffold | scaffold1252.1 |
| Synonym | pfu_aug1.0_4311.1_01695 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1252.1_08282.t1 | 2 | 1 | Rft-1 | 55 | 254 | 0.0 | 324.2 | 2.7e-26 | 2.0e-22 | 79.2 |
| pfu_aug2.0_1252.1_08282.t1 | 2 | 2 | Rft-1 | 271 | 555 | 0.0 | 324.2 | 0.0 | 0.0 | 251.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1252.1_08282.t1 | gi|524894774|ref|XP_005103879.1| | PREDICTED: protein RFT1 homolog isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1252.1_08282.t1 | gi|676472316|ref|XP_009059453.1| | hypothetical protein LOTGIDRAFT_234090 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1252.1_08282.t1 | gi|291221800|ref|XP_002730908.1| | PREDICTED: protein RFT1 homolog [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1252.1_08282.t1 | gi|390347025|ref|XP_791675.3| | PREDICTED: protein RFT1 homolog isoform X2 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_1252.1_08282.t1 | gi|156385091|ref|XP_001633465.1| | predicted protein [Nematostella vectensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1252.1_08282.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1252.1_08282.t1 atggaaacttctaccttaaaggcagataaagaagttgaagattcacacttgaagaagcgtcttgtagataaccttgaaga ttcaacttctctgccaaccagaaagaaagatgcacagcttggtgatggacatcagcaaaaaaatcgagaattactccttg gatctgcaaagtcagctacctacaatattttgctacagctttgtttgaggttaatgagttttttcctgaatgctgtagtt ttacaccatgtgtccacagatttgctaggagttgtcaacgtaaggcttctgttgctgtattcaacaacactgttcatcag tacagaaggatttgaccaggcttgtctcagcaaactggaaaataaagactggagacaaattattaatcttagctggtgca cggtaccagtaagctgtctagtcagtggtgtattatccacggtgtggatatttttcctggaagctccagatccacacgag attccacattattatcttggtgttatttcttacgctgcatccacaataatcacatgtttagctaggccacacttcatagt aggtcaagcattcctgtgggtcaaactaagggtatcggctgtagctgtgtcggagctagtgagagtcatcattaccgtag tgttagtccttaaattcccatggttaggaattgtttcattttccattgctcagatcatccattccttgatttatactgct atttattatgttaccttcttcataaacatagatggaaaagaggaaaatctaatatttacagaaataagggatttcttccc ccagaaaccaaaaaataagccctggctgaacagggagcagacagtattagccaaaaatttctttgcatcagccatattta agcaaattcttactgaaggagagaaatatgtgatgactgtatttggtgtgttaaatttttctgatcaaggtatttatgag gtgataaacaatctaggatccttggttccccgttttgtgtttaagccaatagaagagagtggatacatactgttctccca gtcactcaaacgaggccaaagactacaggacaataccaaagaagctgtagagatgacaacaaaggtattaacattgctga tacgcaccgttactctgataggctgtataatactggtgtttggacaatcctactcatatctatttttagactggtatgga ggaaagaaaatctcagcaggaccaggtcctctgctcttgaagtggtactccgtctatgtattatttctcgctgttaatgg tgtcacagaatgttattatttggctacaatgggcaatgaagaaatttcaagttacaataagaagctgttagtattctccg gagttttactagcgtccacgttagctctgaccagaatgtttggaagtgtgggatttatcattgctaactgtattaacatg ggaacaaggatttgtcacagtatgtggtacatagagcagtgttataaatccagccatcacagtccagtccagtcgttagt catgtctaaagccgtcattttatccttagtcctgtcatactgcatcacacaagcatccgagaaatatttctgctgcagtt atggatttctgtaccagttagtgcatgttggcataggtgcaatttgtttcttttctgtccttctagtcatttggttcaag gaacctggaatctgggtgtatgtattggagcaatataaagcacacaaaagaacttcaccaaagaacgagggaatgaaaaa agaatga |
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Protein
| Protein ID | pfu_aug2.0_1252.1_08282.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1252.1_08282.t1 METSTLKADKEVEDSHLKKRLVDNLEDSTSLPTRKKDAQLGDGHQQKNRELLLGSAKSATYNILLQLCLRLMSFFLNAVV LHHVSTDLLGVVNVRLLLLYSTTLFISTEGFDQACLSKLENKDWRQIINLSWCTVPVSCLVSGVLSTVWIFFLEAPDPHE IPHYYLGVISYAASTIITCLARPHFIVGQAFLWVKLRVSAVAVSELVRVIITVVLVLKFPWLGIVSFSIAQIIHSLIYTA IYYVTFFINIDGKEENLIFTEIRDFFPQKPKNKPWLNREQTVLAKNFFASAIFKQILTEGEKYVMTVFGVLNFSDQGIYE VINNLGSLVPRFVFKPIEESGYILFSQSLKRGQRLQDNTKEAVEMTTKVLTLLIRTVTLIGCIILVFGQSYSYLFLDWYG GKKISAGPGPLLLKWYSVYVLFLAVNGVTECYYLATMGNEEISSYNKKLLVFSGVLLASTLALTRMFGSVGFIIANCINM GTRICHSMWYIEQCYKSSHHSPVQSLVMSKAVILSLVLSYCITQASEKYFCCSYGFLYQLVHVGIGAICFFSVLLVIWFK EPGIWVYVLEQYKAHKRTSPKNEGMKKE |
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