Gene
| Gene Model ID | pfu_aug2.0_1255.1_18210 |
|---|---|
| Locus | scaffold1255.1 : 10898 ... 14325 : - |
| To GenomeBrowser | scaffold1255.1:10898..14325 |
| Genes list of scaffold | scaffold1255.1 |
| Synonym | pfu_aug1.0_5654.1_52583 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1255.1_18210.t1 | 1 | 1 | Glyco_transf_10 | 135 | 266 | 9.0e-19 | 67.2 | 7.9e-23 | 1.2e-18 | 66.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1255.1_18210.t1 | gi|209880239|ref|XP_002141559.1| | DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris RN66] | 2.0e-14 |
| pfu_aug2.0_1255.1_18210.t1 | gi|675125998|ref|XP_008884886.1| | variable surface lipoprotein [Hammondia hammondi] | 3.0e-14 |
| pfu_aug2.0_1255.1_18210.t1 | gi|67597591|ref|XP_666157.1| | DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis TU502] | 8.0e-14 |
| pfu_aug2.0_1255.1_18210.t1 | gi|66359288|ref|XP_626822.1| | DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat at | 1.0e-13 |
| pfu_aug2.0_1255.1_18210.t1 | gi|383857018|ref|XP_003704003.1| | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_1255.1_18210.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1255.1_18210.t1 atgttgctggtggcattgtttgaaaatttggatacagactttgtaaggataccagctccacaaccattatcactgccagc atctgctcctgtgaaaccagcatctcctcatgtgaaaccagcatctgctcctgtgaaaccagcatctcctcatgtgaaac cagcatctgctcctgcgaaaccagcatctcctcatgtgaaaccagcatcacttcctgtgaaaccagcatctcctcatgtg aaaccagcatcacttcctgcgaaaccagcatctcctcatgtgaaaccagcatcacttcctgtgaaaccagcatctcctat tctgaaaccagcatctcctcatgtgaaaccagcatcacttcctgcgaaaccagcatctcctcatgtgaaaccagcatcgc ctcctgtgaaaccagcatctccttttctgaaaccaaaccctgtcaagatcctgtattggaatccaccaaattgggtcggc actgaaaaatccttaaacgcaaaagagtgtttgaaaaacaggtgtcaagttacatataacaggatggagttggatgatgc catcgcagctatttttgaagttcaacgcgcggtacagttgccaaagaaacgtatgggacaagtatggattttttctacta tggaatccataagatataactataatgatatgaagaattatgatcgtaaatttaattggacatggacatacaggagagat tctgacatcctcaagatgtatgataccatacaaaagcgaaaaacaccagattttacattaaaaccgaaggaaatattgaa acataatctaaagacatcttttggatggtgggacactgctctacatcgagtaaaagagaagaatacgtaa |
|
Protein
| Protein ID | pfu_aug2.0_1255.1_18210.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1255.1_18210.t1 MLLVALFENLDTDFVRIPAPQPLSLPASAPVKPASPHVKPASAPVKPASPHVKPASAPAKPASPHVKPASLPVKPASPHV KPASLPAKPASPHVKPASLPVKPASPILKPASPHVKPASLPAKPASPHVKPASPPVKPASPFLKPNPVKILYWNPPNWVG TEKSLNAKECLKNRCQVTYNRMELDDAIAAIFEVQRAVQLPKKRMGQVWIFSTMESIRYNYNDMKNYDRKFNWTWTYRRD SDILKMYDTIQKRKTPDFTLKPKEILKHNLKTSFGWWDTALHRVKEKNT |
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