Gene
| Gene Model ID | pfu_aug2.0_1255.1_18219 |
|---|---|
| Locus | scaffold1255.1 : 147326 ... 157413 : + |
| To GenomeBrowser | scaffold1255.1:147326..157413 |
| Genes list of scaffold | scaffold1255.1 |
| Synonym | pfu_aug1.0_7936.1_38665 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase i subunit rpa12 | GO:0003824 GO:0005488 GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1255.1_18219.t2 | 1 | 1 | TFIIS_C | 63 | 99 | 3.1e-16 | 58.7 | 4.0e-19 | 8.4e-16 | 57.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1255.1_18219.t2 | gi|671037993|ref|XP_008709775.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA12, partial [Ursus maritimus] | 4.0e-19 |
| pfu_aug2.0_1255.1_18219.t2 | gi|241643366|ref|XP_002411049.1| | DNA-directed RNA polymerase I, putative [Ixodes scapularis] | 1.0e-18 |
| pfu_aug2.0_1255.1_18219.t2 | gi|676486528|ref|XP_009064006.1| | hypothetical protein LOTGIDRAFT_167880, partial [Lottia gigantea] | 2.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_1255.1_18219.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1255.1_18219.t1 atgtccaagaaaaaggatgtggtgacatgtgtctcatgcagctaccaaatagatgttacagagttcaatggagttaaaac ccatacatgcatagtattcaataaacaagatcagttaaaacaccatgatgatgaaaatctacaggcccccagtggaccaa tggctgacagaaaatgttcaaaatgtggtcacgagggaatgatatatacaacacgacaaacccgatcagcagacgaaggt caaacggttttctttacctgtcccagctgcaagtttccatggctgataccaccattagaaatccagccaaccgttgaacg aatcatgcaagggatattgaccaatcagcatgttgtttgcattccccgcctgatatactttttcgtttttctaaaatcaa ttttacctgtagaagctttccacgaagtcatacgattttcgggtgcagcaacttttatggacaatttcaagggaggcagg agtcgagaaattcaaaacgaggccaatggatcctcttctaccaatggaactgcagaaacgaactgtaaccatgggaacaa tagtttactagaaccgattcagaagcagtccagtttgaatgaaaatagtgacgatattccggaaattgacactcataact cttcgtgcgttaatggacacttcgatttgtcgtctgtcagtgacgaagcaggcgaaactaaattgttgaagcgatcaaga catgatgataatttatctggtgctcaagaatga |
|
| Transcript ID | pfu_aug2.0_1255.1_18219.t2 |
| Definition | - |
>pfu_aug2.0_1255.1_18219.t2 atgtgtctcatgcagctaccaaatagatgttacagactatgctacaacattactgccacagccttactaccatcaaagtt caatggagttaaaacccatacatgcatagtattcaataaacaagatcagttaaaacaccatgatgatgaaaatctacagg cccccagtggaccaatggctgacagaaaatgttcaaaatgtggtcacgagggaatgatatatacaacacgacaaacccga tcagcagacgaaggtcaaacggttttctttacctgtcccagctgcaagtttccatggctgataccaccattagaaatcca gccaaccgttgaacgaatcatgcaagggatattgaccaatcagcatgttgtttgcattccccgcctgatatactttttcg tttttctaaaatcaattttacctgtagaagctttccacgaagtcatacgattttcgggtgcagcaacttttatggacaat ttcaagggaggcaggagtcgagaaattcaaaacgaggccaatggatcctcttctaccaatggaactgcagaaacgaactg taaccatgggaacaatagtttactagaaccgattcagaagcagtccagtttgaatgaaaatagtgacgatattccggaaa ttgacactcataactcttcgtgcgttaatggacacttcgatttgtcgtctgtcagtgacgaagcaggcgaaactaaattg ttgaagcgatcaagacatgatgataatttatctggtgctcaagaatga |
|
Protein
| Protein ID | pfu_aug2.0_1255.1_18219.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1255.1_18219.t1 MSKKKDVVTCVSCSYQIDVTEFNGVKTHTCIVFNKQDQLKHHDDENLQAPSGPMADRKCSKCGHEGMIYTTRQTRSADEG QTVFFTCPSCKFPWLIPPLEIQPTVERIMQGILTNQHVVCIPRLIYFFVFLKSILPVEAFHEVIRFSGAATFMDNFKGGR SREIQNEANGSSSTNGTAETNCNHGNNSLLEPIQKQSSLNENSDDIPEIDTHNSSCVNGHFDLSSVSDEAGETKLLKRSR HDDNLSGAQE |
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| Protein ID | pfu_aug2.0_1255.1_18219.t2 |
| Definition | - |
>pfu_aug2.0_1255.1_18219.t2 MCLMQLPNRCYRLCYNITATALLPSKFNGVKTHTCIVFNKQDQLKHHDDENLQAPSGPMADRKCSKCGHEGMIYTTRQTR SADEGQTVFFTCPSCKFPWLIPPLEIQPTVERIMQGILTNQHVVCIPRLIYFFVFLKSILPVEAFHEVIRFSGAATFMDN FKGGRSREIQNEANGSSSTNGTAETNCNHGNNSLLEPIQKQSSLNENSDDIPEIDTHNSSCVNGHFDLSSVSDEAGETKL LKRSRHDDNLSGAQE |
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