Gene
| Gene Model ID | pfu_aug2.0_1258.1_28162 |
|---|---|
| Locus | scaffold1258.1 : 39546 ... 70085 : + |
| To GenomeBrowser | scaffold1258.1:39546..70085 |
| Genes list of scaffold | scaffold1258.1 |
| Synonym | pfu_aug1.0_39538.1_48361 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1258.1_28162.t1 | 2 | 1 | CDT1 | 190 | 230 | 0.0 | 177.2 | 1.8 | 3800.0 | -2.4 |
| pfu_aug2.0_1258.1_28162.t1 | 2 | 2 | CDT1 | 365 | 533 | 0.0 | 177.2 | 0.0 | 0.0 | 177.2 |
| pfu_aug2.0_1258.1_28162.t1 | 1 | 1 | CHB_HEX_C_1 | 569 | 638 | 3.0e-08 | 33.3 | 3.5e-11 | 7.3e-08 | 32.0 |
| pfu_aug2.0_1258.1_28162.t1 | 1 | 1 | CHB_HEX_C | 570 | 639 | 8.0e-06 | 25.6 | 1.0e-08 | 2.2e-05 | 24.2 |
| pfu_aug2.0_1258.1_28162.t1 | 1 | 1 | Fn3_assoc | 577 | 641 | 1.7e-08 | 34.4 | 2.0e-11 | 4.3e-08 | 33.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1258.1_28162.t1 | gi|725556138|ref|XP_010332063.1| | PREDICTED: DNA replication factor Cdt1 [Saimiri boliviensis boliviensis] | 0.0 |
| pfu_aug2.0_1258.1_28162.t1 | gi|350539779|ref|NP_001233647.1| | DNA replication factor Cdt1 [Cricetulus griseus] | 0.0 |
| pfu_aug2.0_1258.1_28162.t1 | gi|620946492|ref|XP_007671104.1| | PREDICTED: DNA replication factor Cdt1, partial [Ornithorhynchus anatinus] | 0.0 |
| pfu_aug2.0_1258.1_28162.t1 | gi|532003217|ref|XP_005345857.1| | PREDICTED: DNA replication factor Cdt1 [Microtus ochrogaster] | 0.0 |
| pfu_aug2.0_1258.1_28162.t1 | gi|635034374|ref|XP_007992542.1| | PREDICTED: DNA replication factor Cdt1 [Chlorocebus sabaeus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1258.1_28162.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1258.1_28162.t1 atggcacaagcgagagtgacagagtttttctctgccaaaaaacgcacgtttgatgcacaaccatcaaagagaaggaaatt agcaagtacaaatcaagatgctgaagtttttaatacagtcgatgttaacgtgagagccacgcgatcgtctctgcgcataa aaaatgatgtcgccccacgcgctgaaaatgcgccccaacagacgcgatcatcgacaccaaaaccggctgaaaagcctggt agaaaaccgagagcaaagccaaccaaaggtaaacagatgaaaggccagtctaaaatcaaagatgcttttgagattgtaga agcaaattcgaggcccgcctctccagaccatgagcagataactcctaaaccaaaccttgatcaaatagtcccaactgagg aagttacttcagcttgggatgaacatgacggtccccttacacctagtaaacgacaaaatgaacagaccagttccgactca gagggggaaatcctctcccggaaacggaggcgaagaggaacaacgaaagaggtggaaaagacaccattgaaaaatgcacc cacgccgcaacgaaaatcgagaaagaagcttcaaatgagacccaatgtcatacagtctagtgacagtgacgaacaagagc aagaggttgaacatcctatttctgagaaatcagaatttagacaagcgttatccatacaacaaaccccacctgctatcccc cccttaccagatacaccagaagtcgttagaagacaggcaacaaagggtccagatgtacctacatctgccaaggtcaaggc cgccatggaacagctagagcaactcaaagctggcaagacaaagaagttgaaccaagaagctgttaaggagaagctgtcta aagtcactaatctacaggacttgaaggctcagctagcagaaatgaagcagaccaaggcccagctgaagaaacctctgcca tctccgatcaaaactgaagtatctgacgtcaaagtcaagactgaagaaataacaagcgaaccctgtgagaagaaagctcc agcctatgagagattccacaccctggcagctccagccccgcccattttagccctaccctataaatacaaactgctggctg acatgttcaggggaatggacacagtggtcagtatgctccataatcggtcagaggtttgctcattctctaagctcaaggcc gcagtccaggaaatgaccaaaaggaattttgaagagaagaatgttggacagattaagacagtgtacccttcagcctacac ttacagacaagagaaaggactgccggcattcggtaataaagtgacaggataccagctcacaatggaaccaaatctctcac cagatgatgagagtaagttgatgacaaagaacggaaatacaatgttttcagccaagcatctcctggagagaagaagcaca ttccacaacaagctgatcaccatcgtcaaaaaataccacaaggaattccttgccagtcttgatcgcccactgtcggtacc tgacgacaaaatcacgagatggcatcccaaattcaatgtggacactgttcctgatgtaaaacctgatgatctgcctcagc ctccgaccgtgaagaaataccatacggctaaagatgtcctagaggataccaggggaaagcttcctagcaggttcaagcaa atcaatggattatcagtgttaataaatgatactttaaggttatactttgagacacctgactgtaagctttacttcacctc tgatggtgccaagccgaccccgtttcaaagaaaggtcggaggtcgagaggtcactttcagatatattgggccgtttaccc tgaaagctggaaagaggacgctgaaagcagtggcagtgtcaagagatggcatacgggagagtgatgttatgactaaacag tttgtcgtggaggatgtaggacagcttaaacccggggacacgaccacagactacgacactactgacgattatacaagctt cttcgagacctccgatcttgacacggataatacactgaaaagtggcaccagcagtgcatgcaaaaccaaaaagaaaccaa agaagagtaaatctccgacaagatcaaaatctcctctacggtcatctttgagacggtcccccaaggaggcatgggccagt agtttacagtttgatggcactggtgctgtagatggacatcaaagtcctcaacctcagcaaattcctgatgggccttttaa ccctacaaactactctggtactcagatcaatgtgtggggaggggcatggcctggaatgaacgcaaaccaaagcggagttg cctttggggtaccagctgtaccaaacaacccctacccaacccagatgggctacctcacagaaaatatgatacagggttgc aatcctgagaacagacatgtcactgtgggagatataaggaagatgatggacaagaaacccaaggcagtggaagcccctcc cccagccccagaaccccagaaagctatagaatatcctgcatataaagacccacccgttgaagctgtcagtcctggtaaag gtaagtttatttttctagctgtagatagaaacaagtttagcaactttgttcctatgttcagagagtctggagttgatgga tctagactagtagaacttacagatgtagacttactgaagatgagatgtcctcataataagaagctagatctcttgagatg catagaaaatattccagggaaaaatgatgttagaagtcgagggccggttcatgtaccacccagcatactgtatatcttct taacgcacctacagacagtaatgaacctcctagtcagcctaacagagtcacagaccaccacccagtgtacctcaacaagc atcccattatccacctcaaaatggaggtataagttcccagaaattgcatttggcacaagtgttgggaatcggatggagta a |
|
Protein
| Protein ID | pfu_aug2.0_1258.1_28162.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1258.1_28162.t1 MAQARVTEFFSAKKRTFDAQPSKRRKLASTNQDAEVFNTVDVNVRATRSSLRIKNDVAPRAENAPQQTRSSTPKPAEKPG RKPRAKPTKGKQMKGQSKIKDAFEIVEANSRPASPDHEQITPKPNLDQIVPTEEVTSAWDEHDGPLTPSKRQNEQTSSDS EGEILSRKRRRRGTTKEVEKTPLKNAPTPQRKSRKKLQMRPNVIQSSDSDEQEQEVEHPISEKSEFRQALSIQQTPPAIP PLPDTPEVVRRQATKGPDVPTSAKVKAAMEQLEQLKAGKTKKLNQEAVKEKLSKVTNLQDLKAQLAEMKQTKAQLKKPLP SPIKTEVSDVKVKTEEITSEPCEKKAPAYERFHTLAAPAPPILALPYKYKLLADMFRGMDTVVSMLHNRSEVCSFSKLKA AVQEMTKRNFEEKNVGQIKTVYPSAYTYRQEKGLPAFGNKVTGYQLTMEPNLSPDDESKLMTKNGNTMFSAKHLLERRST FHNKLITIVKKYHKEFLASLDRPLSVPDDKITRWHPKFNVDTVPDVKPDDLPQPPTVKKYHTAKDVLEDTRGKLPSRFKQ INGLSVLINDTLRLYFETPDCKLYFTSDGAKPTPFQRKVGGREVTFRYIGPFTLKAGKRTLKAVAVSRDGIRESDVMTKQ FVVEDVGQLKPGDTTTDYDTTDDYTSFFETSDLDTDNTLKSGTSSACKTKKKPKKSKSPTRSKSPLRSSLRRSPKEAWAS SLQFDGTGAVDGHQSPQPQQIPDGPFNPTNYSGTQINVWGGAWPGMNANQSGVAFGVPAVPNNPYPTQMGYLTENMIQGC NPENRHVTVGDIRKMMDKKPKAVEAPPPAPEPQKAIEYPAYKDPPVEAVSPGKGKFIFLAVDRNKFSNFVPMFRESGVDG SRLVELTDVDLLKMRCPHNKKLDLLRCIENIPGKNDVRSRGPVHVPPSILYIFLTHLQTVMNLLVSLTESQTTTQCTSTS IPLSTSKWRYKFPEIAFGTSVGNRME |
|