Gene
| Gene Model ID | pfu_aug2.0_1259.1_31568 |
|---|---|
| Locus | scaffold1259.1 : 78793 ... 89545 : - |
| To GenomeBrowser | scaffold1259.1:78793..89545 |
| Genes list of scaffold | scaffold1259.1 |
| Synonym | pfu_aug1.0_115307.1_57065 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1259.1_31568.t1 | 1 | 1 | Rad60-SLD | 1 | 71 | 1.3e-20 | 72.8 | 9.7e-24 | 1.8e-20 | 72.3 |
| pfu_aug2.0_1259.1_31568.t1 | 1 | 1 | ubiquitin | 6 | 74 | 1.5e-35 | 120.3 | 1.1e-38 | 2.1e-35 | 119.9 |
| pfu_aug2.0_1259.1_31568.t1 | 1 | 1 | Ubiquitin_2 | 11 | 69 | 1.9e-06 | 28.0 | 3.6e-09 | 6.7e-06 | 26.2 |
| pfu_aug2.0_1259.1_31568.t1 | 1 | 1 | Ribosomal_L40e | 78 | 128 | 3.3e-30 | 103.4 | 2.9e-33 | 5.4e-30 | 102.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1259.1_31568.t1 | gi|17136570|ref|NP_476776.1| | ribosomal protein L40, isoform A [Drosophila melanogaster] | 0.0 |
| pfu_aug2.0_1259.1_31568.t1 | gi|755933720|ref|XP_011314742.1| | PREDICTED: ubiquitin-60S ribosomal protein L40 [Fopius arisanus] | 0.0 |
| pfu_aug2.0_1259.1_31568.t1 | gi|751800092|ref|XP_011210036.1| | PREDICTED: ubiquitin-60S ribosomal protein L40 [Bactrocera dorsalis] | 0.0 |
| pfu_aug2.0_1259.1_31568.t1 | gi|195342419|ref|XP_002037798.1| | GM18458 [Drosophila sechellia] | 0.0 |
| pfu_aug2.0_1259.1_31568.t1 | gi|91080141|ref|XP_968519.1| | PREDICTED: ubiquitin-60S ribosomal protein L40 [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1259.1_31568.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1259.1_31568.t1 atgcagatctttgtgaagacattgaccgggaagaccatcaccttggaggtggaaccctctgatactatagaaaatgtcaa ggccaaaatacaggataaagaaggtatccccccagatcaacagaggttgatttttgctggcaagcagcttgaagatggaa ggactctatctgactacaatattcagaaagaatccactctacatttggtactgaggttgagaggcgggatcatcgagccc agtttacgtatcttggccagtaaatataactgtgacaagatgatttgtagaaagtgctacgcccgtctccaccccagggc cacaaactgccgtaagaggaagtgtggacacaccaacaacatccgccccaagaagaagctgaagtag |
|
Protein
| Protein ID | pfu_aug2.0_1259.1_31568.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1259.1_31568.t1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEP SLRILASKYNCDKMICRKCYARLHPRATNCRKRKCGHTNNIRPKKKLK |
|