Gene
| Gene Model ID | pfu_aug2.0_126.1_20292 |
|---|---|
| Locus | scaffold126.1 : 458147 ... 473772 : + |
| To GenomeBrowser | scaffold126.1:458147..473772 |
| Genes list of scaffold | scaffold126.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| homeobox protein hox-a6 | GO:0003700 GO:0005634 GO:0006355 GO:0007275 GO:0043565 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_126.1_20292.t1 | 2 | 1 | Homeobox | 191 | 247 | 6.30584e-44 | 147.4 | 5.2e-25 | 7.7e-22 | 76.6 |
| pfu_aug2.0_126.1_20292.t1 | 2 | 2 | Homeobox | 275 | 331 | 6.30584e-44 | 147.4 | 5.2e-25 | 7.7e-22 | 76.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_126.1_20292.t1 | gi|584040956|ref|XP_006779042.1| | PREDICTED: homeobox protein Hox-A6 [Myotis davidii] | 0.0 |
| pfu_aug2.0_126.1_20292.t1 | gi|744588675|ref|XP_010986405.1| | PREDICTED: homeobox protein Hox-A7 [Camelus dromedarius] | 0.0 |
| pfu_aug2.0_126.1_20292.t1 | gi|676432031|ref|XP_009046442.1| | hypothetical protein LOTGIDRAFT_89598, partial [Lottia gigantea] | 8.00001e-42 |
| pfu_aug2.0_126.1_20292.t1 | gi|524913947|ref|XP_005111795.1| | PREDICTED: homeotic protein antennapedia-like [Aplysia californica] | 9.99967e-42 |
| pfu_aug2.0_126.1_20292.t1 | gi|675892310|ref|XP_009031657.1| | hypothetical protein HELRODRAFT_116524 [Helobdella robusta] | 2.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_126.1_20292.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_126.1_20292.t1 atgcctgcacatttacccgggtcggggagcggcggccccacggacgtgtactacccacgggcggagaaagtcgtggatac aggagggttccacgggacatctcatcctatgtgttatgataacgacaatccagcttcataccaaatgtccagttattcat gttaccctaatgtttacgatcaccggtttgagcattctcatattagtaacaatcagctgcagcctatgaacctagtggcg aaacaggcaggacttgttcatggaacgaacggactttacacccacccggcctatccgggcactcaaaacttcagtaccca aggacttccgttctcagaagacagacagaattgtgtaaaaagtgacgatagctgcattcctacacccccacccaactatc aaatacatggtgaacaggggcatcaaaatcatggacatttaagtatacatagttcggatttatcacatagaatgaacgga ctgtcgcatccgcattctcaaaatatgcaagtttttccatggatgggtgcatgcacaacgctcaatggagcggaagtgac gtacgagcagaaaagaacccgacaaacctatacccgttatcagactctggaactggaaaaagaatttcatttcaacagat atctaacccggaggcgaaggattgagattgcacatttactaggacttacagaaagacaaataaaaatctggtttcaaaac agacggatgaagtggaagaaggacaacaatatacccaaactgaccggaccggaccgatcaaaaccggaaaacgattccga cccggaagtgacgtacgagcagaaaagaacccgacaaacctatacccgttatcagactctggaactggaaaaagaatttc atttcaacagatatctaacccggaggcgaaggattgagattgcacatttactaggacttacagaaagacaaataaaaatc tggtttcaaaacagacggatgaagtggaagaaggacaacaatatacccaaactgaccggaccggaccgatcaaaaccgga aaacgattccgaccgtccgcttacatcagtgtctagtccaaattcggacggaaatttttcaaactga |
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Protein
| Protein ID | pfu_aug2.0_126.1_20292.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_126.1_20292.t1 MPAHLPGSGSGGPTDVYYPRAEKVVDTGGFHGTSHPMCYDNDNPASYQMSSYSCYPNVYDHRFEHSHISNNQLQPMNLVA KQAGLVHGTNGLYTHPAYPGTQNFSTQGLPFSEDRQNCVKSDDSCIPTPPPNYQIHGEQGHQNHGHLSIHSSDLSHRMNG LSHPHSQNMQVFPWMGACTTLNGAEVTYEQKRTRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHLLGLTERQIKIWFQN RRMKWKKDNNIPKLTGPDRSKPENDSDPEVTYEQKRTRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHLLGLTERQIKI WFQNRRMKWKKDNNIPKLTGPDRSKPENDSDRPLTSVSSPNSDGNFSN |
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