Gene
| Gene Model ID | pfu_aug2.0_1267.1_24825 |
|---|---|
| Locus | scaffold1267.1 : 115260 ... 132355 : - |
| To GenomeBrowser | scaffold1267.1:115260..132355 |
| Genes list of scaffold | scaffold1267.1 |
| Synonym | pfu_aug1.0_4932.1_38025 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| argininosuccinate synthase | GO:0000050 GO:0000052 GO:0000053 GO:0001101 GO:0004055 GO:0005515 GO:0005524 GO:0005829 GO:0006526 GO:0006531 GO:0016597 GO:0043231 GO:0044822 GO:0045429 GO:0048545 GO:0048731 GO:0070062 GO:0071417 GO:0071499 GO:0097458 GO:1901701 GO:1903038 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1267.1_24825.t1 | 2 | 1 | Arginosuc_synth | 10 | 37 | 0.0 | 201.0 | 1.0e-10 | 5.0e-07 | 29.0 |
| pfu_aug2.0_1267.1_24825.t1 | 2 | 2 | Arginosuc_synth | 38 | 178 | 0.0 | 201.0 | 0.0 | 0.0 | 170.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1267.1_24825.t1 | gi|119608342|gb|EAW87936.1| | argininosuccinate synthetase, isoform CRA_d [Homo sapiens] | 0.0 |
| pfu_aug2.0_1267.1_24825.t1 | gi|260828723|ref|XP_002609312.1| | hypothetical protein BRAFLDRAFT_124725 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1267.1_24825.t1 | gi|52219052|ref|NP_001004603.1| | argininosuccinate synthase [Danio rerio] | 0.0 |
| pfu_aug2.0_1267.1_24825.t1 | gi|512974163|ref|XP_004849168.1| | 0.0 | |
| pfu_aug2.0_1267.1_24825.t1 | gi|556965123|ref|XP_005992196.1| | PREDICTED: argininosuccinate synthase isoform X2 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1267.1_24825.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1267.1_24825.t1 atgtctaccgatgtcaagaagagagtagtgttagcgtacagcggaggactggacacgtcatgtatattggtctggctcat agaacaaggatatgacgtcatcgctttctgccaacacgatattcctgttccagtgactccaaaatcaccatggagtatgg acgccaacatgatgcatataagttacgaatcgggagttttagaggatccaggggcggaaggaccgggggatctgtatcag atgacagtggatccagaaaatgccccgaatgattctgagaagatagaaatagaatttaaagcagggttacctgttcgagt tcaaaatttgaacgatggaaccacaaaatcagacgcacttgaattgtttctgtatcttaacgaaataggcgggaagcatg ggattggaagagttgacattgtggaaaatagattcattggaatgaagtccagaggtatatacgagaccccagcaggaacc attcttatagcagctcatctcgacgtggagatctttactatggacaggtatgaatgttcaaggagactatga |
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Protein
| Protein ID | pfu_aug2.0_1267.1_24825.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1267.1_24825.t1 MSTDVKKRVVLAYSGGLDTSCILVWLIEQGYDVIAFCQHDIPVPVTPKSPWSMDANMMHISYESGVLEDPGAEGPGDLYQ MTVDPENAPNDSEKIEIEFKAGLPVRVQNLNDGTTKSDALELFLYLNEIGGKHGIGRVDIVENRFIGMKSRGIYETPAGT ILIAAHLDVEIFTMDRYECSRRL |
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