Gene
| Gene Model ID | pfu_aug2.0_1269.1_31582 |
|---|---|
| Locus | scaffold1269.1 : 160796 ... 164075 : + |
| To GenomeBrowser | scaffold1269.1:160796..164075 |
| Genes list of scaffold | scaffold1269.1 |
| Synonym | pfu_aug1.0_447.1_29262 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1269.1_31582.t1 | 2 | 1 | TGF_beta | 134 | 155 | 3.9e-30 | 104.2 | 0.91 | 6800.0 | -2.7 |
| pfu_aug2.0_1269.1_31582.t1 | 2 | 2 | TGF_beta | 210 | 312 | 3.9e-30 | 104.2 | 1.2e-33 | 9.1e-30 | 103.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1269.1_31582.t1 | gi|524871617|ref|XP_005092580.1| | PREDICTED: growth/differentiation factor 6-A-like [Aplysia californica] | 4.06377e-44 |
| pfu_aug2.0_1269.1_31582.t1 | gi|222431641|gb|ACM50754.1| | nodal-like protein [Aplysia californica] | 5.0e-39 |
| pfu_aug2.0_1269.1_31582.t1 | gi|432888038|ref|XP_004075036.1| | PREDICTED: nodal homolog [Oryzias latipes] | 4.0e-33 |
| pfu_aug2.0_1269.1_31582.t1 | gi|729730866|ref|XP_010561277.1| | PREDICTED: nodal homolog [Haliaeetus leucocephalus] | 5.0e-33 |
| pfu_aug2.0_1269.1_31582.t1 | gi|723562328|ref|XP_010302301.1| | PREDICTED: nodal homolog, partial [Balearica regulorum gibbericeps] | 9.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_1269.1_31582.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1269.1_31582.t1 atggacagttcggcggaggcccttgagtacttgcttcctttaaggtttcgtgaaattatgagcatcacttttggagatgt caaaactatgtcagccaatcagaacatcggcggccatgtttgagagtccgaactggacatacatttcaagatcgcctctt taccagacacagaagtgctccataaagccgaacttcgatttaaaaaggatacagcacaaatcaagatgagagtgttcttg acaataaggagggacgaccgtaaaattaggacacatgtatatcaagtaaaacccatatctcgctcagagcacctcgcaat agacgtcactgcattagccagaccgtgggtagagggatacaacggccgagtttccctgcaggcccagattaaggcgtgtt ctatggtgacgtgtggacccattccagcatcttcgtcccatctactgcttttcactcaggacaacagctttttagaagaa ctacaccgaagtggtgccttttctttatcgaattcctcgtttgttccacatgtgatagagaaaagagacacgtcccgatc tcttaacattgattctaacagcagaaggaaaaacattaaagacagatatcgtacaaagaagcgacgtagagtgtgtagtt cgtccaaattaattgttgactttaagcatctaggatgggcacggtatatagttatacccaaaagctacgacgcaaggctt tgtagaggtagctgtccgtcgccagtaaaaccagaactgtccccaacaaaccacgccctcatacagagcctgatgagact cggcaatactcggcgaattccgatgccgtgctgcgtcccgaaaacgctacttccgctgagtatgctatattatcatggag aggaagtagttatacgtcaccacaaggacatgatagtagaaagctgcgcgtgtagatga |
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Protein
| Protein ID | pfu_aug2.0_1269.1_31582.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1269.1_31582.t1 MDSSAEALEYLLPLRFREIMSITFGDVKTMSANQNIGGHVXESELDIHFKIASLPDTEVLHKAELRFKKDTAQIKMRVFL TIRRDDRKIRTHVYQVKPISRSEHLAIDVTALARPWVEGYNGRVSLQAQIKACSMVTCGPIPASSSHLLLFTQDNSFLEE LHRSGAFSLSNSSFVPHVIEKRDTSRSLNIDSNSRRKNIKDRYRTKKRRRVCSSSKLIVDFKHLGWARYIVIPKSYDARL CRGSCPSPVKPELSPTNHALIQSLMRLGNTRRIPMPCCVPKTLLPLSMLYYHGEEVVIRHHKDMIVESCACR |
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