Gene
| Gene Model ID | pfu_aug2.0_127.1_23517 |
|---|---|
| Locus | scaffold127.1 : 124760 ... 138045 : - |
| To GenomeBrowser | scaffold127.1:124760..138045 |
| Genes list of scaffold | scaffold127.1 |
| Synonym | pfu_aug1.0_22813.1_04244 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dihydrofolate reductase | GO:0016491 GO:0016787 GO:0018130 GO:0019438 GO:0044271 GO:1901362 GO:1901607 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_127.1_23517.t1 | 1 | 1 | DHFR_1 | 1 | 133 | 7.8e-25 | 87.3 | 6.0e-29 | 8.8e-25 | 87.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_127.1_23517.t1 | gi|676489783|ref|XP_009065052.1| | hypothetical protein LOTGIDRAFT_155225 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_127.1_23517.t1 | gi|390459824|ref|XP_003732371.1| | PREDICTED: dihydrofolate reductase [Callithrix jacchus] | 2.00386e-43 |
| pfu_aug2.0_127.1_23517.t1 | gi|395825569|ref|XP_003786000.1| | PREDICTED: dihydrofolate reductase isoform X1 [Otolemur garnettii] | 2.99878e-43 |
| pfu_aug2.0_127.1_23517.t1 | gi|488528295|ref|XP_004455954.1| | PREDICTED: dihydrofolate reductase [Dasypus novemcinctus] | 8.00141e-43 |
| pfu_aug2.0_127.1_23517.t1 | gi|85658490|dbj|BAE78431.1| | 1.00053e-42 |
Transcript
| Transcript ID | pfu_aug2.0_127.1_23517.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_127.1_23517.t1 atgggcagaaaaacatggttttcaattcctgagaagtttcggccgcttgcaaagaggattaacatcatattaagtagaga aatgaaagaggtaccggagggtacatttgttgcacgtagtttagacgaggcaatacagcttgtatcaggtaatggagaat tggcagacaaagtagagtctgttcatatcataggtggaagctcggtttacaaggaggcactagaatccagctatccatgt cgtatttatttcacacgagtgttggcagacttcaaatgtgatactttcctaccggaatttgatgaaaacaagtatcacaa actagataacttggaacatataccgtcagaagtgatgacggagaaggacattaactttcaatttgaagtgtatgagaagg tatcgtga |
|
Protein
| Protein ID | pfu_aug2.0_127.1_23517.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_127.1_23517.t1 MGRKTWFSIPEKFRPLAKRINIILSREMKEVPEGTFVARSLDEAIQLVSGNGELADKVESVHIIGGSSVYKEALESSYPC RIYFTRVLADFKCDTFLPEFDENKYHKLDNLEHIPSEVMTEKDINFQFEVYEKVS |
|