Gene
| Gene Model ID | pfu_aug2.0_127.1_23526 |
|---|---|
| Locus | scaffold127.1 : 372066 ... 388424 : - |
| To GenomeBrowser | scaffold127.1:372066..388424 |
| Genes list of scaffold | scaffold127.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_127.1_23526.t1 | 4 | 1 | LRR_4 | 23 | 62 | 2.1e-18 | 65.5 | 9.3e-08 | 0.00023 | 20.7 |
| pfu_aug2.0_127.1_23526.t1 | 2 | 1 | LRR_8 | 24 | 77 | 4.9e-12 | 45.4 | 3.7e-09 | 9.2e-06 | 25.3 |
| pfu_aug2.0_127.1_23526.t1 | 1 | 1 | LRR_9 | 25 | 154 | 3.9e-07 | 29.7 | 2.2e-10 | 5.3e-07 | 29.3 |
| pfu_aug2.0_127.1_23526.t1 | 4 | 2 | LRR_4 | 43 | 84 | 2.1e-18 | 65.5 | 7.2e-12 | 1.8e-08 | 33.8 |
| pfu_aug2.0_127.1_23526.t1 | 4 | 3 | LRR_4 | 66 | 105 | 2.1e-18 | 65.5 | 6.3e-11 | 1.6e-07 | 30.8 |
| pfu_aug2.0_127.1_23526.t1 | 2 | 2 | LRR_8 | 75 | 121 | 4.9e-12 | 45.4 | 1.4e-09 | 3.4e-06 | 26.7 |
| pfu_aug2.0_127.1_23526.t1 | 4 | 4 | LRR_4 | 87 | 120 | 2.1e-18 | 65.5 | 4.2e-06 | 0.011 | 15.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_127.1_23526.t1 | gi|676464053|ref|XP_009056798.1| | hypothetical protein LOTGIDRAFT_233089 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_127.1_23526.t1 | gi|524869653|ref|XP_005091618.1| | PREDICTED: leucine-rich repeat-containing protein 61-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_127.1_23526.t1 | gi|657749174|ref|XP_008309950.1| | PREDICTED: leucine-rich repeat-containing protein 61 [Cynoglossus semilaevis] | 0.0 |
| pfu_aug2.0_127.1_23526.t1 | gi|410908026|ref|XP_003967492.1| | PREDICTED: leucine-rich repeat-containing protein 61 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_127.1_23526.t1 | gi|597765266|ref|XP_007246537.1| | PREDICTED: leucine-rich repeat-containing protein 61-like isoform X2 [Astyanax mexicanus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_127.1_23526.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_127.1_23526.t1 atggacgatggcaagataacaaagccattattgaaaagcagaagtggagaatttgatgttgacagcattcattcccttaa cctcaaagattatggtatatcagatctgggatgtataggagaatgcacaggactggagaggctgaatttgtcatgtaatg atgtaagccgactaaccaaactggcaggactaaataacctgacttttcttaacctttccgccaataggatctcatcacta gagggtcttcaggctcttgaaagtctacagattttaaatctatcaggaaatcttataggcagtgttgatagtctacgatg tctgacaggtctggagaaactggaagagttacgtctacaggataaaattcacggactgtctaaccccgtctgtatgaaca gaaattaccgcaaagatatgattgatattttcccaaacctcaaaatcctggatgagcgtaaggatttcagtatcagcgag atgatggagccggaaccctgggtaccagatagtttctggagggagtctggtcagtttgaagtgtccatactggctgatgc tgaacagcaattagaggatatgctagcctcatgtaaaatgtcagtcaacaagtctgagaaaatcctggataaactaaaaa ctgagaataattcacctaacaacaaggaagatcctagttaa |
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Protein
| Protein ID | pfu_aug2.0_127.1_23526.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_127.1_23526.t1 MDDGKITKPLLKSRSGEFDVDSIHSLNLKDYGISDLGCIGECTGLERLNLSCNDVSRLTKLAGLNNLTFLNLSANRISSL EGLQALESLQILNLSGNLIGSVDSLRCLTGLEKLEELRLQDKIHGLSNPVCMNRNYRKDMIDIFPNLKILDERKDFSISE MMEPEPWVPDSFWRESGQFEVSILADAEQQLEDMLASCKMSVNKSEKILDKLKTENNSPNNKEDPS |
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