Gene
| Gene Model ID | pfu_aug2.0_127.1_23533 |
|---|---|
| Locus | scaffold127.1 : 460645 ... 477518 : + |
| To GenomeBrowser | scaffold127.1:460645..477518 |
| Genes list of scaffold | scaffold127.1 |
| Synonym | pfu_aug1.0_16706.1_18373 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_127.1_23533.t1 | 1 | 1 | IMS | 67 | 248 | 1.26117e-44 | 151.7 | 0.0 | 2.38221e-44 | 150.7 |
| pfu_aug2.0_127.1_23533.t1 | 1 | 1 | IMS_C | 331 | 464 | 6.5e-07 | 29.3 | 9.5e-10 | 1.6e-06 | 28.1 |
| pfu_aug2.0_127.1_23533.t1 | 2 | 1 | DUF4414 | 613 | 640 | 6.6e-07 | 29.2 | 6.2e-05 | 0.1 | 12.5 |
| pfu_aug2.0_127.1_23533.t1 | 2 | 2 | DUF4414 | 753 | 784 | 6.6e-07 | 29.2 | 3.4e-05 | 0.056 | 13.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_127.1_23533.t1 | gi|676477746|ref|XP_009061204.1| | hypothetical protein LOTGIDRAFT_219556 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_127.1_23533.t1 | gi|524867373|ref|XP_005090498.1| | PREDICTED: DNA polymerase eta-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_127.1_23533.t1 | gi|213513962|ref|NP_001133709.1| | DNA polymerase iota [Salmo salar] | 0.0 |
| pfu_aug2.0_127.1_23533.t1 | gi|688554011|ref|XP_009299578.1| | PREDICTED: DNA polymerase iota isoform X1 [Danio rerio] | 0.0 |
| pfu_aug2.0_127.1_23533.t1 | gi|736250061|ref|XP_010787742.1| | PREDICTED: DNA polymerase iota [Notothenia coriiceps] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_127.1_23533.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_127.1_23533.t1 atgattgatgatgatacagacagtggggatgaggagtggcaggagcccattgatctggttacacaccctcacatcactaa tgttgatgacgtgggctcatcatcaagaagtgtctttaaagagggtaggaggaagatactggcaagcagtactcagaatg cttgccgtcccagtgatcatgctcgtaccatagtacacattgatgtagactgtttctatgcccaggttgagatgttaaga aatccggagctgaaagacaaacccttaggtatccagcaaaaattcatagtggtgacatgtaattataaagccagagagta cggagtgaccaaactgatgacattaaaagatgcgaaggagaaatgtcctcagcttgtactggtcagtggagaagatctga ccaactacagacatgtctcctataaaatatctgagtttctcctgaagtacacaccacttgtggagcgtttgggcttcgat gaaaactatctggatatatcctcattggttgagcagagaatacaaggaaatgacttcactgatgaggtcaaaggtcatgt ttacaccccaacttgtagtagttcagatactgaagatatgtcagtatgtacatgtggctgtagacagcgtataacggtgg gttcccaggttgctgatgacatacgacaagccctatttgaggagattggtattacatgttgtgctggtatatcttataac aaactcctggccaaactagtaggagaacgtcacaagccaaatcaacagacaacactcttcccccactgtgtacaggactt gatgacaagtcttggcaaagtcagaaaaattcctggtattggatcagctatgatgaagagattagagtcgttgggtatat acactgtgacagacctacagaattactgtctaaatgacctcaaatcacagctaggtgaatctcaggcagaacacatccat aggctgagtatgggaatagatgaagacatggttcacacgtatgggaaacctcagacaatcagtgatgaagattcatacaa ttataagaaatgctgtacattggttgatgcacgtggaaagattaggagccttcttcttaacctcataaaaagattagagg aagatgatcgcctagcgggaacaatgaggttaacgatttgtaggataattgacaacaagttcagaaatcgagagtctaag cagtgccccctaccaccaagtctgatgagtaaaatatcatctaaggcagatgatgtaatacagaggctggaggccctggc actgtcactactacagaagattgtcgacaccagcaagcctttccagatcgctcttatgaacattgcattctgtaatttac aggagaaagccaaaaactccataagtttattcttctctccaaaggcaaaactctcagagaattcacttcagagtcatgac tttgtatataaagacagaagtaactgttcagtgatagttagacgtgactcggggcagaaagatctgtcacacagtaatac acaaacaaatgaaaggtgtctattgttatctcagaaaagtgggaaggaaacagttcattcagtagaaaatacagacattc ctcctggagctgtagtgtgcacgtcatcggctgagaagagaaaatctctacaaaatgatgaaccctcctcaaagaagcca aaacaaagcaatgatttacatggacctagttcttacgacagacacaatccatctagtgaggaaaggaaaaccagcatcag tacttgtgacagtcaaaatagttgtcaaggaaagaaatcccatgaaggatcagattctttggcctctgttggtgagattg acctttgtgtacttgctgagttgcctgttaacatacgggaagagatcatgtcacagctaacagccggacagaaagcaaac cttacatcaatgacccccatgacctcaactaagtcaaggtcagattgtggtgttaaaacttctcatagaagcattataag tcattcccaaagtatttttgatgataaatgtgttgaaagcatggaggagaaaaatgctctgaaaatgattagaaacacag aatgtgatcatggacatacagtatcacagtttaatgaagatttaaatgaaaaaaagagaaattctacagtgctaacatct cagtgtcaagctgtacaatctgacagtgcagtcccaagtagctctgtcacacccctccctagtaacatagacaaatctga cagtgcagtcccaagtagttctgtcacacccctccctagtaacatagacagggaagttttccttagccttcctcctgaca tacagagggaggtgttaggggatcaacaaggcttactgacccccaagcttcacagcactgatactaaaagcaaggcatca aaaggacaagtcaggaaaaacactacaaagaaaactaggtcaaacacagatggtaacattctgaagttttttaataaaaa tccgtaa |
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Protein
| Protein ID | pfu_aug2.0_127.1_23533.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_127.1_23533.t1 MIDDDTDSGDEEWQEPIDLVTHPHITNVDDVGSSSRSVFKEGRRKILASSTQNACRPSDHARTIVHIDVDCFYAQVEMLR NPELKDKPLGIQQKFIVVTCNYKAREYGVTKLMTLKDAKEKCPQLVLVSGEDLTNYRHVSYKISEFLLKYTPLVERLGFD ENYLDISSLVEQRIQGNDFTDEVKGHVYTPTCSSSDTEDMSVCTCGCRQRITVGSQVADDIRQALFEEIGITCCAGISYN KLLAKLVGERHKPNQQTTLFPHCVQDLMTSLGKVRKIPGIGSAMMKRLESLGIYTVTDLQNYCLNDLKSQLGESQAEHIH RLSMGIDEDMVHTYGKPQTISDEDSYNYKKCCTLVDARGKIRSLLLNLIKRLEEDDRLAGTMRLTICRIIDNKFRNRESK QCPLPPSLMSKISSKADDVIQRLEALALSLLQKIVDTSKPFQIALMNIAFCNLQEKAKNSISLFFSPKAKLSENSLQSHD FVYKDRSNCSVIVRRDSGQKDLSHSNTQTNERCLLLSQKSGKETVHSVENTDIPPGAVVCTSSAEKRKSLQNDEPSSKKP KQSNDLHGPSSYDRHNPSSEERKTSISTCDSQNSCQGKKSHEGSDSLASVGEIDLCVLAELPVNIREEIMSQLTAGQKAN LTSMTPMTSTKSRSDCGVKTSHRSIISHSQSIFDDKCVESMEEKNALKMIRNTECDHGHTVSQFNEDLNEKKRNSTVLTS QCQAVQSDSAVPSSSVTPLPSNIDKSDSAVPSSSVTPLPSNIDREVFLSLPPDIQREVLGDQQGLLTPKLHSTDTKSKAS KGQVRKNTTKKTRSNTDGNILKFFNKNP |
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