Gene
| Gene Model ID | pfu_aug2.0_1271.1_04932 |
|---|---|
| Locus | scaffold1271.1 : 110391 ... 124065 : - |
| To GenomeBrowser | scaffold1271.1:110391..124065 |
| Genes list of scaffold | scaffold1271.1 |
| Synonym | pfu_aug1.0_83826.1_49302 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1271.1_04932.t1 | 3 | 1 | PBP | 123 | 193 | 1.7e-19 | 70.0 | 4.7e-07 | 0.0069 | 16.2 |
| pfu_aug2.0_1271.1_04932.t1 | 3 | 2 | PBP | 342 | 415 | 1.7e-19 | 70.0 | 2.2e-18 | 3.3e-14 | 52.9 |
| pfu_aug2.0_1271.1_04932.t1 | 3 | 3 | PBP | 465 | 488 | 1.7e-19 | 70.0 | 0.0075 | 110.0 | 2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1271.1_04932.t1 | gi|260818344|ref|XP_002604343.1| | hypothetical protein BRAFLDRAFT_124211 [Branchiostoma floridae] | 5.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_1271.1_04932.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1271.1_04932.t1 atggcctcagcttcgactgtatgttctccggccaaccgtaccagtgatcttagcagatgtttaggaggtataaaagccat atctgagagcaccagtcagttctggtttggaactgcttacaacacacgatgcgcaggagcaacctacagtgattgggagt gtacgaactcccgggttggtacagcggatagtatcgccagtcggctagggctatccagtaatctggaattcttcgtcgat gtcaagtatcattccagtgcaggaacgtacacaagctgtggaaacaagtacacggttagcgagtcaaggaacataagtct tgatccagctagtaatgaagaggtcactccatgggaagtaagaatgacgccgactatatcatgggagccaactaatgata cttacacattgtttgttgtggacgtcggtgttagtatcaatcatggaatctacatcaatattcctggaaatagatttgca gacgcagaggcattcaagccataccatggaccacaacagttttacacatcatttgccaatgtctacgcctttctggtttt caaacaacagaccgataatctcgtacttccgcctgattgggatgcgagactaagcaacccaggtttcatggcgtatacta taccggcaatgatggccgctcttaacttaactggtcctgttggtatgaattggatgagcgtcattggggatccgtatgct atacagaggtttatagacagaaggagtttctatcagtgcccgtatctgatccaaaatgctatcaagacacacaaccggag ctttattccatctggaacacagctgaccgttaatattgatgtgacattctcaccacctgctttcacgttctcttcatgct gtagtcagtactcttatccagccaagacatttaagcttacacctttggaaaacgcaaatgtaaagacgggagaagtgcgt gcatcagtaataccaactgtggaattaaccatcactggattatttttcactagattcaacttcacagggaggacttacac tttgctatgcgtggatccagatgttcctagtccgacagcaggtacacaagacaggccgctgttacattggcaggtcatta acatagttaatggtgatctgtccaccggtcacgtcgttatgccgtatgctggacccatgcctccggataacaacccacat tactattacttcttattatacgaacagagaatggagataaattcaagtgcattgatggactatgcagatccaccgggcgg aaggttcctcttcaacatatccggttttgtgaccgacaaccatttgacattggctggagcaacatggatggtagctacgc atgatgagtatgtaaggtacaactatgtctccaatcaggggcgtaaccagtctaatgtgtgtgccggggtgcaaggctat accaatccgtgtcctacatctaaagctgcaacaaacaatacatcatggagtcttcttttcattctgatatgctcatttat ttgccacaatcatcgtgcagcatag |
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Protein
| Protein ID | pfu_aug2.0_1271.1_04932.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1271.1_04932.t1 MASASTVCSPANRTSDLSRCLGGIKAISESTSQFWFGTAYNTRCAGATYSDWECTNSRVGTADSIASRLGLSSNLEFFVD VKYHSSAGTYTSCGNKYTVSESRNISLDPASNEEVTPWEVRMTPTISWEPTNDTYTLFVVDVGVSINHGIYINIPGNRFA DAEAFKPYHGPQQFYTSFANVYAFLVFKQQTDNLVLPPDWDARLSNPGFMAYTIPAMMAALNLTGPVGMNWMSVIGDPYA IQRFIDRRSFYQCPYLIQNAIKTHNRSFIPSGTQLTVNIDVTFSPPAFTFSSCCSQYSYPAKTFKLTPLENANVKTGEVR ASVIPTVELTITGLFFTRFNFTGRTYTLLCVDPDVPSPTAGTQDRPLLHWQVINIVNGDLSTGHVVMPYAGPMPPDNNPH YYYFLLYEQRMEINSSALMDYADPPGGRFLFNISGFVTDNHLTLAGATWMVATHDEYVRYNYVSNQGRNQSNVCAGVQGY TNPCPTSKAATNNTSWSLLFILICSFICHNHRAA |
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