Gene
| Gene Model ID | pfu_aug2.0_1271.1_04934 |
|---|---|
| Locus | scaffold1271.1 : 147068 ... 154995 : - |
| To GenomeBrowser | scaffold1271.1:147068..154995 |
| Genes list of scaffold | scaffold1271.1 |
| Synonym | pfu_aug1.0_1371.1_36987 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| toll-like receptor 4 isoform x1 | GO:0001819 GO:0002221 GO:0010557 GO:0016020 GO:0031325 GO:0031326 GO:0044464 GO:0048519 GO:0071219 GO:0080090 GO:1901700 GO:1902533 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1271.1_04934.t1 | 13 | 1 | LRR_1 | 43 | 56 | 2.4e-08 | 32.8 | 0.26 | 760.0 | 0.9 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 1 | LRR_4 | 44 | 53 | 1.3e-13 | 50.2 | 2.6 | 7800.0 | -3.4 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 2 | LRR_1 | 60 | 78 | 2.4e-08 | 32.8 | 0.043 | 130.0 | 3.2 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 2 | LRR_4 | 61 | 94 | 1.3e-13 | 50.2 | 0.00012 | 0.36 | 10.4 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 1 | LRR_8 | 61 | 117 | 1.2e-27 | 95.4 | 5.9e-12 | 1.7e-08 | 34.0 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 2 | LRR_8 | 85 | 140 | 1.2e-27 | 95.4 | 2.9e-10 | 8.7e-07 | 28.6 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 3 | LRR_4 | 85 | 120 | 1.3e-13 | 50.2 | 2.2e-05 | 0.065 | 12.8 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 3 | LRR_1 | 85 | 104 | 2.4e-08 | 32.8 | 0.0071 | 21.0 | 5.6 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 4 | LRR_4 | 107 | 146 | 1.3e-13 | 50.2 | 6.9e-05 | 0.21 | 11.2 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 4 | LRR_1 | 109 | 134 | 2.4e-08 | 32.8 | 0.12 | 360.0 | 1.8 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 3 | LRR_8 | 130 | 144 | 1.2e-27 | 95.4 | 0.14 | 410.0 | 0.8 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 5 | LRR_4 | 130 | 157 | 1.3e-13 | 50.2 | 0.0033 | 9.7 | 5.9 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 5 | LRR_1 | 130 | 142 | 2.4e-08 | 32.8 | 0.032 | 95.0 | 3.6 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 4 | LRR_8 | 171 | 200 | 1.2e-27 | 95.4 | 0.74 | 2200.0 | -1.6 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 6 | LRR_4 | 198 | 206 | 1.3e-13 | 50.2 | 1.9 | 5500.0 | -2.9 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 5 | LRR_8 | 259 | 269 | 1.2e-27 | 95.4 | 0.72 | 2100.0 | -1.5 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 6 | LRR_1 | 260 | 269 | 2.4e-08 | 32.8 | 0.32 | 950.0 | 0.6 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 6 | LRR_8 | 318 | 350 | 1.2e-27 | 95.4 | 0.033 | 97.0 | 2.8 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 7 | LRR_4 | 318 | 350 | 1.3e-13 | 50.2 | 0.0049 | 15.0 | 5.3 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 7 | LRR_1 | 318 | 331 | 2.4e-08 | 32.8 | 5.0 | 15000.0 | -3.1 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 8 | LRR_1 | 343 | 350 | 2.4e-08 | 32.8 | 5.0 | 15000.0 | -3.3 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 8 | LRR_4 | 412 | 421 | 1.3e-13 | 50.2 | 0.22 | 660.0 | 0.0 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 7 | LRR_8 | 440 | 475 | 1.2e-27 | 95.4 | 0.018 | 54.0 | 3.6 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 8 | LRR_8 | 440 | 504 | 1.2e-27 | 95.4 | 1.2e-06 | 0.0036 | 17.0 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 9 | LRR_1 | 440 | 448 | 2.4e-08 | 32.8 | 0.26 | 770.0 | 0.8 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 10 | LRR_1 | 464 | 475 | 2.4e-08 | 32.8 | 5.0 | 15000.0 | -3.2 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 9 | LRR_4 | 485 | 509 | 1.3e-13 | 50.2 | 3.1e-06 | 0.0093 | 15.5 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 9 | LRR_8 | 486 | 529 | 1.2e-27 | 95.4 | 3.9e-11 | 1.2e-07 | 31.3 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 10 | LRR_8 | 492 | 551 | 1.2e-27 | 95.4 | 5.7e-12 | 1.7e-08 | 34.0 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 11 | LRR_1 | 493 | 510 | 2.4e-08 | 32.8 | 0.00041 | 1.2 | 9.4 |
| pfu_aug2.0_1271.1_04934.t1 | 11 | 11 | LRR_8 | 518 | 552 | 1.2e-27 | 95.4 | 1.1e-06 | 0.0032 | 17.1 |
| pfu_aug2.0_1271.1_04934.t1 | 10 | 10 | LRR_4 | 518 | 555 | 1.3e-13 | 50.2 | 6.9e-08 | 0.00021 | 20.8 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 12 | LRR_1 | 518 | 535 | 2.4e-08 | 32.8 | 2.5e-05 | 0.074 | 13.1 |
| pfu_aug2.0_1271.1_04934.t1 | 13 | 13 | LRR_1 | 541 | 555 | 2.4e-08 | 32.8 | 0.023 | 70.0 | 4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1271.1_04934.t1 | gi|524879973|ref|XP_005096655.1| | PREDICTED: toll-like receptor 4-like [Aplysia californica] | 2.0e-22 |
| pfu_aug2.0_1271.1_04934.t1 | gi|348586265|ref|XP_003478889.1| | PREDICTED: toll-like receptor 4 isoform X1 [Cavia porcellus] | 2.0e-11 |
| pfu_aug2.0_1271.1_04934.t1 | gi|514479206|ref|XP_005008012.1| | PREDICTED: toll-like receptor 4 isoform X2 [Cavia porcellus] | 2.0e-11 |
| pfu_aug2.0_1271.1_04934.t1 | gi|524896776|ref|XP_005104859.1| | PREDICTED: protein slit-like [Aplysia californica] | 4.0e-11 |
| pfu_aug2.0_1271.1_04934.t1 | gi|699626572|ref|XP_009896681.1| | PREDICTED: toll-like receptor 2 type-2 [Picoides pubescens] | 8.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_1271.1_04934.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1271.1_04934.t1 atgccgttcgaaaatatacatatatgcatgttcggaatttctgtcctcgttgtaggaatagggactacatatggggtttg ctcagactgtactagaattcctgctcctggcacccaacactcttacgactgttcaagctgtggtctatcagagataccga tcttccctaatacttctcgtatcatctatctccataacaacacaatatcaacgattacaaatcagcctttccaaatgctg acagatgtggcagaactccgtctagatcataataaaatcactgtaatagaaaaggacagtttaactcatttgcatgcgtt aggcgtcttgaatatttccgtgaataagttgtcaagcatggcctttaagaatctcactttgccatttaacattcagtcac ttgatcttcgattcaataaatatgaaaaatatcccgccataattagtacttatacccagttgagggatctgaaaattgat attttcagcggttttcattttgacgacaatttcctctcactatcgatgctttcaaacctaacttttaatccaagaacagc tttcactttgctaaacaatacgtttgaaggactacggaattcttctttgaaagaaataactttttacttcggtggatatg ctagaaatccagtcgaaatagggtttttaaaacctttccgcttcatacagagtttgaaaacttttagaatcaatatgggc ggagtctttgacatcatggatattcttaagtatttacatggattacgtgacatgaagttagatgtaatggatatcagtgg aaacaactggtattcctacagaaaacacttcctgagaaaaaaggacttagaaaatctcctgaccatgtgcgtgaaggaaa tcaatataggttacagttatatatactactttccgttcatggatgctctaggctctaatttctcaaaatgcttgcagaaa ctggtggtcaaggcaaacagaatcgtttggacagtcgaagaaataatcgggctcatctctcttccatcgattaaatattt ggacatatctatcccaacaattatgaaatctgaagtaaaacaattgaggaataagaatttgctttttaaaccagtaaccg agcatgtaaatgtaagaacgtatggactaaagacaatagaatatgctgatttgtccggagtaactttgaatgatggaata ttaagttcagacagtttgatatattactctattatttttgatatgccaaatcttaaaacactaaagtctgcatatacgtc tgttgaaatatgtaacttcgacaattatttcaaaggaaatctttcttatctggatatgtcgggctggaactgctatatgg tgaatccaagattctttcagagacacaacaaactcaaaattctgcatgcatcatcctcgcaaatcggactatttatcaac agaaagagacatttgtctttatttaagggtctatcaaatctggaaatgttagatatttcattcaatcgcataaaacattt tagtgacatcttttttgaggaccaaatccattccctgcgatacctgaatttgagtcataacatgctacgaagaattccag tggcaatcttggccttgtcgaaactcattactatcgattttagctataatcagtttgaatattttgacaaacacgacaga cacattattgaatcattgaaaaacacagccttcagttttggcgggaatggttttgaatgtagctgtagatacgttgatag cttggtatggatgagtnttcaatag |
|
Protein
| Protein ID | pfu_aug2.0_1271.1_04934.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1271.1_04934.t1 MPFENIHICMFGISVLVVGIGTTYGVCSDCTRIPAPGTQHSYDCSSCGLSEIPIFPNTSRIIYLHNNTISTITNQPFQML TDVAELRLDHNKITVIEKDSLTHLHALGVLNISVNKLSSMAFKNLTLPFNIQSLDLRFNKYEKYPAIISTYTQLRDLKID IFSGFHFDDNFLSLSMLSNLTFNPRTAFTLLNNTFEGLRNSSLKEITFYFGGYARNPVEIGFLKPFRFIQSLKTFRINMG GVFDIMDILKYLHGLRDMKLDVMDISGNNWYSYRKHFLRKKDLENLLTMCVKEINIGYSYIYYFPFMDALGSNFSKCLQK LVVKANRIVWTVEEIIGLISLPSIKYLDISIPTIMKSEVKQLRNKNLLFKPVTEHVNVRTYGLKTIEYADLSGVTLNDGI LSSDSLIYYSIIFDMPNLKTLKSAYTSVEICNFDNYFKGNLSYLDMSGWNCYMVNPRFFQRHNKLKILHASSSQIGLFIN RKRHLSLFKGLSNLEMLDISFNRIKHFSDIFFEDQIHSLRYLNLSHNMLRRIPVAILALSKLITIDFSYNQFEYFDKHDR HIIESLKNTAFSFGGNGFECSCRYVDSLVWMSXQ |
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