Gene
| Gene Model ID | pfu_aug2.0_129.1_30259 |
|---|---|
| Locus | scaffold129.1 : 236283 ... 250761 : - |
| To GenomeBrowser | scaffold129.1:236283..250761 |
| Genes list of scaffold | scaffold129.1 |
| Synonym | pfu_aug1.0_12187.1_68460 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_129.1_30259.t1 | 3 | 1 | WHEP-TRS | 24 | 58 | 3.5e-10 | 39.3 | 1.4e-13 | 3.5e-10 | 39.3 |
| pfu_aug2.0_129.1_30259.t1 | 1 | 1 | tRNA-synt_2b | 105 | 399 | 0.0 | 228.8 | 0.0 | 0.0 | 228.0 |
| pfu_aug2.0_129.1_30259.t1 | 3 | 2 | WHEP-TRS | 175 | 191 | 3.5e-10 | 39.3 | 0.46 | 1100.0 | -0.7 |
| pfu_aug2.0_129.1_30259.t1 | 2 | 1 | HGTP_anticodon | 473 | 487 | 4.8e-16 | 58.4 | 2.8 | 7000.0 | -3.0 |
| pfu_aug2.0_129.1_30259.t1 | 2 | 2 | HGTP_anticodon | 593 | 667 | 4.8e-16 | 58.4 | 6.7e-19 | 1.7e-15 | 56.7 |
| pfu_aug2.0_129.1_30259.t1 | 3 | 3 | WHEP-TRS | 654 | 668 | 3.5e-10 | 39.3 | 1.9 | 4700.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_129.1_30259.t1 | gi|524870848|ref|XP_005092204.1| | PREDICTED: glycine--tRNA ligase-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_129.1_30259.t1 | gi|572271061|ref|XP_006613508.1| | PREDICTED: glycine--tRNA ligase-like [Apis dorsata] | 0.0 |
| pfu_aug2.0_129.1_30259.t1 | gi|749733486|ref|XP_011146188.1| | PREDICTED: glycine--tRNA ligase [Harpegnathos saltator] | 0.0 |
| pfu_aug2.0_129.1_30259.t1 | gi|759034746|ref|XP_011335415.1| | PREDICTED: glycine--tRNA ligase isoform X1 [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_129.1_30259.t1 | gi|66521713|ref|XP_391940.2| | PREDICTED: glycine--tRNA ligase [Apis mellifera] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_129.1_30259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_129.1_30259.t1 atgtgtgctgtactgtacttgcaggtcattgatatcttacaactctgctgtgcgtccatgtgtctatgtggagacctggt gaggaggttgaagtcggagaaggcacctgatattgatgtacagagagctgtggctgaactcaaaaccaggaaaaatgcct tggaacaaaaggagctacaattgacctcaaatgatgactttgacagaaacaagctagaggaactcttaaaacagaaattc ttctacgatcagtcattttccatctatggtggtgtgacaggtctttatgactttggtcctatgggatgtgccgttaaggc taaccttctccaagcatggcgtaatttcttcgtattagaagaacagatgttggaagttgattgtgcaatgctaactccgg agccagtactcaaagcctcaggccatgtagagagatttcaggactatatggtaaaagatgttaagaatggagaatgcttc agggccgatcatcttattgaaggtcattttgaaaaattattaaaagacaaaaaagttacggatgaagtgaaagaggaaat ccgtagtcttcttccaaaggtggatggtatgagcagggatgacatgcaggccgtactacgaaaatttgatatgaaatcac cgattacaaacaatgatctaacagatcctatagactttaaccttatgttcggtatctccatcggtccaactggttatatg aaaggctttctgaggcccgagacagctcaaggtatctttgtgaattttaaacggcttttggagtttaaccagggcaagtt accatttgccgcagcacaaattggtaatgctttcaggaatgagatttctcctagatctggcttactcagggtcagagagt tcacaatggcagaaatagagcatttttgtgacccagatgagaagaatcatcataaattttctgacgtagcagatttagaa ttagtgctatactcagcgtgtaaccagatggatggcaaagcaccacagagagttactgtcggcaaagctgttagtgagag gctaatagccaatgagacgctaggttacttcatggctcgaatttacttgttcatgctgaaagttggcattgatccaaaga agttgaggttccgacaacacatgtcgaacgagatggctcattacgcgtgtgactgctgggatgctgagtgtaaaacatca tacggttggattgaatgtgtgggctgtgcagacagatcgtgctatgatttatcacagcatgctaaagctactggcgtgag actggctgcggagaaaatgttaccggaacctatatcctttaaacaccataacttattttacattataacagtgagggaga cagaaataaagatagatgacaagtcctttacaattacggcagatatggttgaaatcaagaaataccaaaaaaccgtgcat gttcaggagattgtgccttcagtgatagagccatccttcggtataggccgtgttatgtactgtatatttgaacataactt taaagtcagagaaggagacgaaaaaagaacgtacctttctttaccacctgtgatagcaccatataaatgttcagtattac ccttgagtagtaaaccagacttcagagatcttgtctcagatttgtttccaatacggaagatcgcaaatacttctaaccaa actatacgaatgttctcacgcactgttagattgttctccattgttatgacgtcatcaatttatttgggcagaaaaggtgc ccaaattttgaacaatggtttagcacgtaatttgacaagatgtgacatatctcataaagttgatgacagtggtggatcca tcggcagacgatatgctcgaacggatgccatctcgataccgttcggtgttaccatagactttgacagtctgaagtcacct catacggcaacactaagagaaagggacacaactaaacaaattcgtgcggagataaaagagatccctgagattgtacgaga tctagcaaccggacggagaacgtgggatgatgtactgaacaactaccctctgtttgaacagcaagaagctacaaagtga |
|
Protein
| Protein ID | pfu_aug2.0_129.1_30259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_129.1_30259.t1 MCAVLYLQVIDILQLCCASMCLCGDLVRRLKSEKAPDIDVQRAVAELKTRKNALEQKELQLTSNDDFDRNKLEELLKQKF FYDQSFSIYGGVTGLYDFGPMGCAVKANLLQAWRNFFVLEEQMLEVDCAMLTPEPVLKASGHVERFQDYMVKDVKNGECF RADHLIEGHFEKLLKDKKVTDEVKEEIRSLLPKVDGMSRDDMQAVLRKFDMKSPITNNDLTDPIDFNLMFGISIGPTGYM KGFLRPETAQGIFVNFKRLLEFNQGKLPFAAAQIGNAFRNEISPRSGLLRVREFTMAEIEHFCDPDEKNHHKFSDVADLE LVLYSACNQMDGKAPQRVTVGKAVSERLIANETLGYFMARIYLFMLKVGIDPKKLRFRQHMSNEMAHYACDCWDAECKTS YGWIECVGCADRSCYDLSQHAKATGVRLAAEKMLPEPISFKHHNLFYIITVRETEIKIDDKSFTITADMVEIKKYQKTVH VQEIVPSVIEPSFGIGRVMYCIFEHNFKVREGDEKRTYLSLPPVIAPYKCSVLPLSSKPDFRDLVSDLFPIRKIANTSNQ TIRMFSRTVRLFSIVMTSSIYLGRKGAQILNNGLARNLTRCDISHKVDDSGGSIGRRYARTDAISIPFGVTIDFDSLKSP HTATLRERDTTKQIRAEIKEIPEIVRDLATGRRTWDDVLNNYPLFEQQEATK |
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