Gene
| Gene Model ID | pfu_aug2.0_129.1_30265 |
|---|---|
| Locus | scaffold129.1 : 443146 ... 459100 : + |
| To GenomeBrowser | scaffold129.1:443146..459100 |
| Genes list of scaffold | scaffold129.1 |
| Synonym | pfu_aug1.0_6169.1_23961 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_129.1_30265.t1 | 4 | 1 | zf-B_box | 14 | 38 | 5.9e-12 | 45.2 | 4.5 | 3700.0 | -2.1 |
| pfu_aug2.0_129.1_30265.t1 | 3 | 1 | zf-C3HC4_2 | 15 | 60 | 2.7e-06 | 27.2 | 3.3e-09 | 2.7e-06 | 27.2 |
| pfu_aug2.0_129.1_30265.t1 | 2 | 1 | zf-C3HC4 | 15 | 60 | 3.7e-06 | 26.4 | 4.5e-09 | 3.7e-06 | 26.4 |
| pfu_aug2.0_129.1_30265.t1 | 4 | 2 | zf-B_box | 56 | 62 | 5.9e-12 | 45.2 | 6.5 | 5400.0 | -2.7 |
| pfu_aug2.0_129.1_30265.t1 | 4 | 3 | zf-B_box | 110 | 152 | 5.9e-12 | 45.2 | 4.4e-08 | 3.6e-05 | 23.5 |
| pfu_aug2.0_129.1_30265.t1 | 3 | 2 | zf-C3HC4_2 | 113 | 143 | 2.7e-06 | 27.2 | 0.17 | 140.0 | 2.6 |
| pfu_aug2.0_129.1_30265.t1 | 2 | 2 | zf-C3HC4 | 113 | 143 | 3.7e-06 | 26.4 | 1.7 | 1400.0 | -1.0 |
| pfu_aug2.0_129.1_30265.t1 | 4 | 4 | zf-B_box | 188 | 226 | 5.9e-12 | 45.2 | 4.1e-12 | 3.3e-09 | 36.4 |
| pfu_aug2.0_129.1_30265.t1 | 3 | 3 | zf-C3HC4_2 | 203 | 216 | 2.7e-06 | 27.2 | 5.7 | 4700.0 | -2.3 |
| pfu_aug2.0_129.1_30265.t1 | 1 | 1 | Filamin | 400 | 491 | 1.4e-20 | 73.6 | 5.6e-23 | 4.6e-20 | 72.0 |
| pfu_aug2.0_129.1_30265.t1 | 6 | 1 | NHL | 520 | 547 | 0.0 | 177.3 | 3.2e-12 | 2.6e-09 | 36.5 |
| pfu_aug2.0_129.1_30265.t1 | 3 | 1 | SGL | 522 | 556 | 1.8e-13 | 50.4 | 2.2e-05 | 0.018 | 14.4 |
| pfu_aug2.0_129.1_30265.t1 | 6 | 2 | NHL | 567 | 594 | 0.0 | 177.3 | 1.3e-10 | 1.1e-07 | 31.4 |
| pfu_aug2.0_129.1_30265.t1 | 3 | 2 | SGL | 570 | 742 | 1.8e-13 | 50.4 | 2.2e-09 | 1.8e-06 | 27.5 |
| pfu_aug2.0_129.1_30265.t1 | 6 | 3 | NHL | 614 | 641 | 0.0 | 177.3 | 7.0e-09 | 5.8e-06 | 26.0 |
| pfu_aug2.0_129.1_30265.t1 | 6 | 4 | NHL | 661 | 687 | 0.0 | 177.3 | 1.7e-08 | 1.4e-05 | 24.7 |
| pfu_aug2.0_129.1_30265.t1 | 6 | 5 | NHL | 708 | 735 | 0.0 | 177.3 | 3.0e-12 | 2.5e-09 | 36.6 |
| pfu_aug2.0_129.1_30265.t1 | 6 | 6 | NHL | 755 | 782 | 0.0 | 177.3 | 8.2e-10 | 6.8e-07 | 28.9 |
| pfu_aug2.0_129.1_30265.t1 | 3 | 3 | SGL | 756 | 782 | 1.8e-13 | 50.4 | 0.38 | 310.0 | 0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_129.1_30265.t1 | gi|573895686|ref|XP_006635588.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_129.1_30265.t1 | gi|390341274|ref|XP_003725419.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_129.1_30265.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_129.1_30265.t1 atggccacatattccgattcgatcacagatgggcagcacacgtgccctctgtgtcttgggcagtcggacgtcattcggat gctgccctgcttacactcgttttgtaagaactgcctcgaaaggtcgtacactcaagaccggactctaaaccaggagaaga tcatagaatgtccaacatgtcaccaaaccgtaccgttagattcagggggtgtcgagagtttgccgtcaaatctgttttta tccaacatgctagatgtgatggtgtcgcaccaggacgagttcgaaaatggggacctccaactacatagggagcgtgcaat aggtgaacaaagatggtgtagctcgtgtgacgagggtagccaagctacgtcactgtgtaagaactgtaacgaatatctat gcgatagatgtgtaaaagcgcaccaacgagttcgactcactaaagatcactacattgaacgctttgcaatcggtccaatc agtttaccatcacgatcacttcctcagacttcgttactatcaccaactattcaacatccagcattggcacattctgatag gcagcaacactattgtgatcgtcacgagcatgaagttcttcgtctcttttgcgacacttgttctcaggctgtatgtcggg aatgtaccatgtcggaacacgtaggccatagttttatatacctccaagatgcaatagaaaattccaaaattattacctac aaacttttaactgacgctaaaacgggtattaaagcattagaggaaagcatacaactcactcagggtatggcagaacgggt agaaatgcgggcacaaagtgtggcaactgatgtgcggaacaccatccgcaagcatatggcagctttagaagaaagagagc gagacctgttgcgacgcgtggaaaaaattcgacaggtcaaagggaagtcactccacattcaagtcgatgatctcaggcaa gggctaagctctctaatgcagactgttgcagaggttgaaaatcttcttagcaatggttcagacctggacttactaaaaac aaagaacatgatcgcatcagaaatgcagaatgttcgcaagcttcgaggccacctcttgcctcacgaagatgactctattc tctttacacctccagatgccgctttatataatgccataggcaaaatgggcatcattagcagcagtgcatatgcaccaaat acaatagcaaccggtgacggccttcaaaaggctttaaaaggaaaactagcagtgtttgttatccaggccaaagatcatca cggagaactacgtgttgtaggtggcgacccagtcgtttgcctcattcagaatccagaaggtgctttgtatcaaacggaag tgctcgatcgtcaaaatggcacgtatactgtaacttaccgaccccaaacagagggacagcacataatctctgtatcaatt ctaggaaaacatatctcaggaagtccctttcaagttatggtacgaagtggcaggaatttcacctccataggccaagcagt atttcaattcggaggtgaaggagagacagatggcaaactttgtcgtccttggggtatctgctgtgataaagatggattca taattgtggcagatcgcagcaacaatcgaattcaagtcttcactccagatggacacttccatcacaagtttggtacttct ggaacaaaaaacggccaatttgaccgtccagctggtgtggcagttgatggtcaaaaccgcataattgtcgcagacaaaga taaccatcgcattcaattgttttcagttgatggaactttcctcttgaagtttggtgagaagggaaacaaaaatgggcagt ttaactacccatgggatgttgcggcaagctcggatggaaagatgctagtgtcggacactcgcaaccatagagttcaactc ttcacaagtgagggccagtttttaaacaaatacgggtttgagggatccttatggaaacattttgattctccaagaggtgt atgctttaacaatgaaggacacatggtggttaccgattttaacaatcatcgattacttgttatccaccctgacttccaga ctgctcgttttcttggaacagagggcagtagcacagggcagtttttgcgccctcagggcgtagttgttgatcaagagggc aatatcatagtagctgattctcgcaatcacaggattcagattttccagccgaacggaaacttcctctgcaagtttggagt tgctggaatgggacacggccaacttgatcgaccttcgggaatttgtgtttcaccagaaggactcattattgttgtcgact ttggaaataaccgcgtacaagcattttaa |
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Protein
| Protein ID | pfu_aug2.0_129.1_30265.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_129.1_30265.t1 MATYSDSITDGQHTCPLCLGQSDVIRMLPCLHSFCKNCLERSYTQDRTLNQEKIIECPTCHQTVPLDSGGVESLPSNLFL SNMLDVMVSHQDEFENGDLQLHRERAIGEQRWCSSCDEGSQATSLCKNCNEYLCDRCVKAHQRVRLTKDHYIERFAIGPI SLPSRSLPQTSLLSPTIQHPALAHSDRQQHYCDRHEHEVLRLFCDTCSQAVCRECTMSEHVGHSFIYLQDAIENSKIITY KLLTDAKTGIKALEESIQLTQGMAERVEMRAQSVATDVRNTIRKHMAALEERERDLLRRVEKIRQVKGKSLHIQVDDLRQ GLSSLMQTVAEVENLLSNGSDLDLLKTKNMIASEMQNVRKLRGHLLPHEDDSILFTPPDAALYNAIGKMGIISSSAYAPN TIATGDGLQKALKGKLAVFVIQAKDHHGELRVVGGDPVVCLIQNPEGALYQTEVLDRQNGTYTVTYRPQTEGQHIISVSI LGKHISGSPFQVMVRSGRNFTSIGQAVFQFGGEGETDGKLCRPWGICCDKDGFIIVADRSNNRIQVFTPDGHFHHKFGTS GTKNGQFDRPAGVAVDGQNRIIVADKDNHRIQLFSVDGTFLLKFGEKGNKNGQFNYPWDVAASSDGKMLVSDTRNHRVQL FTSEGQFLNKYGFEGSLWKHFDSPRGVCFNNEGHMVVTDFNNHRLLVIHPDFQTARFLGTEGSSTGQFLRPQGVVVDQEG NIIVADSRNHRIQIFQPNGNFLCKFGVAGMGHGQLDRPSGICVSPEGLIIVVDFGNNRVQAF |
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