Gene
| Gene Model ID | pfu_aug2.0_1293.1_11570 |
|---|---|
| Locus | scaffold1293.1 : 16492 ... 43375 : - |
| To GenomeBrowser | scaffold1293.1:16492..43375 |
| Genes list of scaffold | scaffold1293.1 |
| Synonym | pfu_aug1.0_174.1_43563 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: agrin | GO:0044763 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1293.1_11570.t1 | 1 | 1 | Kazal_2 | 497 | 533 | 5.3e-07 | 29.4 | 5.3e-10 | 2.0e-06 | 27.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1293.1_11570.t1 | gi|676448677|ref|XP_009051809.1| | hypothetical protein LOTGIDRAFT_228466 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1293.1_11570.t1 | gi|585659391|ref|XP_006886016.1| | PREDICTED: LOW QUALITY PROTEIN: agrin [Elephantulus edwardii] | 1.0e-08 |
| pfu_aug2.0_1293.1_11570.t1 | gi|617614507|ref|XP_007525809.1| | PREDICTED: agrin [Erinaceus europaeus] | 1.0e-08 |
| pfu_aug2.0_1293.1_11570.t1 | gi|545498990|ref|XP_005620418.1| | PREDICTED: agrin isoform X4 [Canis lupus familiaris] | 2.0e-08 |
| pfu_aug2.0_1293.1_11570.t1 | gi|345800594|ref|XP_536713.3| | PREDICTED: agrin isoformX1 [Canis lupus familiaris] | 2.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_1293.1_11570.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1293.1_11570.t1 atgcctgcccccacaaatgcggagttgaaggaaacgaatgagaacctcaaacaaagactccaagaattaaaggaccagca ccagacagatcaggagaccatggagtccatgaaggagcaaatggacttattgattagacaaaatgaggagctcacccaac agacaagggaggctcctaccaacacaattaatgtggagcccactccagttgccataccaaacaggccaaccagtcaacca agttgtgtggcgacacacaaaccacatgtgccagtgccccagatggagaaatatgatggccatggatccgtgacggagtg gtggctcacttttatgacatttgttagtctccaccaaatgacagatatcaatgccatcagagctctgcctttctatttaa aaggcatagcattgcagtggttcctgcaccttggacaggaatgtaagacctctttggctgtggtgcaggactcaatattt aaacgctttaaacctaaggcaccagtcaataaagaaatcttgcgagttcagcaggcgcctggagaatcagtcgaccagta tttgtaccgagtgaggaagttggctgcagacagcaccatggaggaaagtgtagtaacctttttcgctcaagagggtctga atgacaaactcagacaaatagtaattccccagaaaccagccacaatggaggaactgcgcgagcaggccagccttgcagaa actgccatttgtaccgcaagcccacctgcccccataaacataacagaagccatccaggagggaatccaagctgccacaag ttccctaggtgatctagtgattgcgaccgtggacaaccgcctgtccaaaatgactttccctgccagacagcccgccagac cacgccatggagaccagagtgccaatgacaatatttgcatgcgatgcggagaatccaaccaagttgtgaagcctacggaa tacattaatattgacgatgattggctgaaatcgtaccacagaagtccaaagcatcaaaagaagcaaaagataaataatgt ccacacccaagatacaacggacgatgaagacaccttatcagaaggttctgggtccgggagcgagtctagcgacatgcttc accatacacaaaaacaaaatgttgtgacgtcaagtccgaaaaatatttccatgatatcagcttctccgatagaaatagaa agggaggacaaagatattccagaaattaaaatacacgagggaggagtatttctagaaaacaagactgaaaaagacaatga gaaacaagtatcaacatatcaggagtcagacgaggaagacgatgaagaagaagaaaacgaagactccttggatgaatatc aaattgaagatatacaaaatcaaaacccatgtgacgacgttgaatgccttttcggagcatcatgtgtaacagaaagggat gacagggcagcatgtgtttgtcctgttggggcatgcgtaaatcatgcaggaaattccgtttgtggcagtgatggaatgat ttacgaaaacccttgtgaattaaaaatggcatcttgtgaaaaacaattgaatattacagttgccaaggctaacaggtgtc ataatacaaatataccaacatgtccagaaaccccagagccaagatggagtccatggtctttgtggtttgaatccggcaat tccgaattcaggttcagaatctgtatgaatgacggcgagaacacccagttgtcattaggctgtaatggtgaaactataca ggaacgcatgtgtaaaaaggaagaagacacttcctgtgtaagaccgtatggggcaaagcagatcagttacaaatgttcag gaaccaatgttaaagactttacatctgccgaaactgtatttgctgaagaccttgaaacagagaggggatgtctctactcg ttatatgatgcggcagaggatcgttttgttcacggtaactggacctataagatgatcttggacaaggctgacaaggtagt ctggtgcggacaccgaggaatgtttgttcccttcaccagtccccataaaacatgctcacaaaagctgcacgaattctgta cacctaaaaaagaatgcgatccagttaagagaaagctaaaaaataagggcaacaagaaacataagtgttggaaggagttt gtactaggagaaaacctaccttctggtttgcctattgaggattctctgtacatctgtcagaagtttgcagctggcaccga ctatgctggggtatatggggagaaggcaaactatctgacattgtatgaccgacaggagaaaactccatttatatcatttg gtaaattcagtgaggtgggacaaacaacgtggccagcagtacctcacatggtagaaaaagctctcgtaagaaggatcaag gtatcatga |
|
Protein
| Protein ID | pfu_aug2.0_1293.1_11570.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1293.1_11570.t1 MPAPTNAELKETNENLKQRLQELKDQHQTDQETMESMKEQMDLLIRQNEELTQQTREAPTNTINVEPTPVAIPNRPTSQP SCVATHKPHVPVPQMEKYDGHGSVTEWWLTFMTFVSLHQMTDINAIRALPFYLKGIALQWFLHLGQECKTSLAVVQDSIF KRFKPKAPVNKEILRVQQAPGESVDQYLYRVRKLAADSTMEESVVTFFAQEGLNDKLRQIVIPQKPATMEELREQASLAE TAICTASPPAPINITEAIQEGIQAATSSLGDLVIATVDNRLSKMTFPARQPARPRHGDQSANDNICMRCGESNQVVKPTE YINIDDDWLKSYHRSPKHQKKQKINNVHTQDTTDDEDTLSEGSGSGSESSDMLHHTQKQNVVTSSPKNISMISASPIEIE REDKDIPEIKIHEGGVFLENKTEKDNEKQVSTYQESDEEDDEEEENEDSLDEYQIEDIQNQNPCDDVECLFGASCVTERD DRAACVCPVGACVNHAGNSVCGSDGMIYENPCELKMASCEKQLNITVAKANRCHNTNIPTCPETPEPRWSPWSLWFESGN SEFRFRICMNDGENTQLSLGCNGETIQERMCKKEEDTSCVRPYGAKQISYKCSGTNVKDFTSAETVFAEDLETERGCLYS LYDAAEDRFVHGNWTYKMILDKADKVVWCGHRGMFVPFTSPHKTCSQKLHEFCTPKKECDPVKRKLKNKGNKKHKCWKEF VLGENLPSGLPIEDSLYICQKFAAGTDYAGVYGEKANYLTLYDRQEKTPFISFGKFSEVGQTTWPAVPHMVEKALVRRIK VS |
|