Gene
| Gene Model ID | pfu_aug2.0_1293.1_11573 |
|---|---|
| Locus | scaffold1293.1 : 111146 ... 121815 : + |
| To GenomeBrowser | scaffold1293.1:111146..121815 |
| Genes list of scaffold | scaffold1293.1 |
| Synonym | pfu_aug1.0_12641.1_03260 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| isovaleryl- mitochondrial | GO:0003995 GO:0050660 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1293.1_11573.t1 | 1 | 1 | Acyl-CoA_dh_N | 42 | 96 | 4.7e-11 | 43.2 | 2.7e-14 | 9.8e-11 | 42.2 |
| pfu_aug2.0_1293.1_11573.t1 | 1 | 1 | Acyl-CoA_dh_M | 95 | 123 | 6.4e-09 | 35.1 | 4.0e-12 | 1.5e-08 | 34.0 |
| pfu_aug2.0_1293.1_11573.t1 | 1 | 1 | Acyl-CoA_dh_1 | 180 | 328 | 3.9937e-43 | 147.0 | 0.0 | 5.395e-43 | 146.6 |
| pfu_aug2.0_1293.1_11573.t1 | 1 | 1 | Acyl-CoA_dh_2 | 195 | 309 | 4.6e-13 | 49.5 | 1.9e-16 | 7.1e-13 | 48.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1293.1_11573.t1 | gi|632944968|ref|XP_007887791.1| | PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_1293.1_11573.t1 | gi|642922300|ref|XP_008193101.1| | PREDICTED: LOW QUALITY PROTEIN: isovaleryl-CoA dehydrogenase, mitochondrial [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1293.1_11573.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1293.1_11573.t1 atggctttgatgagaaaagtgttgtttacatcggctaggcggcttgtaaaaagcgcacaacatcttaaacagaacaatag atgttgctccttcttcccagtgaacgattctttatttggtttgacagatgaacagaaacaactgagagaatcagttttcc agttttgtcagaaagaattggcaccaaaagctgatcaaattgacaaagaaaatggctttccagagatgagagaattttgg ttgaagtgtggagaattaggtctgcttggtattacagccccaggagatcattatgtattgaatggtagtaagttctggat tactaacggaccagatgccgatgtccttgtagtatatgctaagacagatctcagtgtagaacctcaacatggtataactg cattccttatagagaagggaatgccagggttttcaacaggtcccaagttagataagctcggtatgagaggatctaatacc agtgaacttatatttgaagactgtaaagtaccagagaagaatttactaggcccacgtaataaaggggtgtatgtaatgtt cagtggtctggatatagagaggctagtactggcagcgggtccgctaggaatcatgcaggcatgttgtgatatggcattca attatgcacatgttcgagaggcatttggacagaaaattggccagtttcagatgattcaatccaaaatggcagatatgtat actttgatgaatgcagcgcgatcatatacttataatgtggccagggcactggatagaggagagagacaaaataatgattg tgccgcagtaatactgtacacagcagaagctgctaccaaggtggcactggatgccatacaaatactaggaggaaatggtt atatcaatgattatccaactggacgatttcttagggacgctaaattatatgaaataggtgcgggtaccagtgaagtaagg agaatggtgattggacgtgctataaacgctcattatagacaatga |
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Protein
| Protein ID | pfu_aug2.0_1293.1_11573.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1293.1_11573.t1 MALMRKVLFTSARRLVKSAQHLKQNNRCCSFFPVNDSLFGLTDEQKQLRESVFQFCQKELAPKADQIDKENGFPEMREFW LKCGELGLLGITAPGDHYVLNGSKFWITNGPDADVLVVYAKTDLSVEPQHGITAFLIEKGMPGFSTGPKLDKLGMRGSNT SELIFEDCKVPEKNLLGPRNKGVYVMFSGLDIERLVLAAGPLGIMQACCDMAFNYAHVREAFGQKIGQFQMIQSKMADMY TLMNAARSYTYNVARALDRGERQNNDCAAVILYTAEAATKVALDAIQILGGNGYINDYPTGRFLRDAKLYEIGAGTSEVR RMVIGRAINAHYRQ |
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