Gene
| Gene Model ID | pfu_aug2.0_1294.1_14937 |
|---|---|
| Locus | scaffold1294.1 : 40371 ... 46665 : - |
| To GenomeBrowser | scaffold1294.1:40371..46665 |
| Genes list of scaffold | scaffold1294.1 |
| Synonym | pfu_aug1.0_126703.1_71737 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 40s ribosomal protein s19 | GO:0000028 GO:0000184 GO:0000462 GO:0002548 GO:0003735 GO:0005730 GO:0005925 GO:0006413 GO:0006414 GO:0006415 GO:0006614 GO:0007000 GO:0009991 GO:0016020 GO:0017134 GO:0019083 GO:0019901 GO:0022627 GO:0030218 GO:0042803 GO:0044822 GO:0051262 GO:0051272 GO:0060265 GO:0060266 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1294.1_14937.t1 | 1 | 1 | Ribosomal_S19e | 4 | 141 | 0.0 | 194.3 | 0.0 | 0.0 | 194.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1294.1_14937.t1 | gi|40643006|emb|CAD91429.1| | ribosomal protein S19 [Crassostrea gigas] | 0.0 |
| pfu_aug2.0_1294.1_14937.t1 | gi|675854560|ref|XP_009012840.1| | hypothetical protein HELRODRAFT_185375 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_1294.1_14937.t1 | gi|524873600|ref|XP_005093544.1| | PREDICTED: 40S ribosomal protein S19 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1294.1_14937.t1 | gi|556984132|ref|XP_005998040.1| | PREDICTED: 40S ribosomal protein S19-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1294.1_14937.t1 | gi|564262913|ref|XP_006270328.1| | PREDICTED: 40S ribosomal protein S19-like [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1294.1_14937.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1294.1_14937.t1 atgggtatctctgtgaaggatgtggatgcacatgatttcaccaaagcccttgctgctttcttaaaaaagcaaggcaaaat gaaggttccagaatggactcccattataaagctggccatatacaatgagctggcaccatacgatgatgattggttctacg ttcgtgcagcttctgtttgccgtcatttatacatcagatctcctgctggtgttggatcactgaccaagatttacggagga cgtcagaggaacggcacagctcccagccacttcaagaggagcagccctaccgtagcacgtaaagtcctccagtctctaga aggactcaaactgatagagaaagacgctaacggaggacgccgtctgacacccgcaggacgtaaggatctggacaggatag catcacagatcaaggagaaaaccaacccaaggaagaagtga |
|
Protein
| Protein ID | pfu_aug2.0_1294.1_14937.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1294.1_14937.t1 MGISVKDVDAHDFTKALAAFLKKQGKMKVPEWTPIIKLAIYNELAPYDDDWFYVRAASVCRHLYIRSPAGVGSLTKIYGG RQRNGTAPSHFKRSSPTVARKVLQSLEGLKLIEKDANGGRRLTPAGRKDLDRIASQIKEKTNPRKK |
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