Gene
| Gene Model ID | pfu_aug2.0_130.1_00285 |
|---|---|
| Locus | scaffold130.1 : 28256 ... 43546 : + |
| To GenomeBrowser | scaffold130.1:28256..43546 |
| Genes list of scaffold | scaffold130.1 |
| Synonym | pfu_aug1.0_73660.1_41961 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nucleolar gtp-binding protein 2 | GO:0005525 GO:0005730 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_130.1_00285.t1 | 2 | 1 | NGP1NT | 18 | 64 | 4.6e-11 | 42.7 | 3.1e-14 | 9.2e-11 | 41.8 |
| pfu_aug2.0_130.1_00285.t1 | 3 | 1 | MMR_HSR1 | 92 | 146 | 2.1e-17 | 63.1 | 0.0011 | 3.3 | 7.7 |
| pfu_aug2.0_130.1_00285.t1 | 3 | 2 | MMR_HSR1 | 203 | 262 | 2.1e-17 | 63.1 | 1.3e-17 | 4.0e-14 | 52.5 |
| pfu_aug2.0_130.1_00285.t1 | 3 | 3 | MMR_HSR1 | 538 | 538 | 2.1e-17 | 63.1 | 1.1 | 3200.0 | -2.0 |
| pfu_aug2.0_130.1_00285.t1 | 2 | 2 | NGP1NT | 570 | 589 | 4.6e-11 | 42.7 | 1.8 | 5400.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_130.1_00285.t1 | gi|676422160|ref|XP_009043914.1| | hypothetical protein LOTGIDRAFT_208405 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_130.1_00285.t1 | gi|410966802|ref|XP_003989917.1| | PREDICTED: nucleolar GTP-binding protein 2 [Felis catus] | 0.0 |
| pfu_aug2.0_130.1_00285.t1 | gi|591333645|ref|XP_007092543.1| | PREDICTED: nucleolar GTP-binding protein 2 [Panthera tigris altaica] | 0.0 |
| pfu_aug2.0_130.1_00285.t1 | gi|617655240|ref|XP_007535371.1| | PREDICTED: nucleolar GTP-binding protein 2 [Erinaceus europaeus] | 0.0 |
| pfu_aug2.0_130.1_00285.t1 | gi|723136392|ref|XP_010284871.1| | PREDICTED: nucleolar GTP-binding protein 2, partial [Phaethon lepturus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_130.1_00285.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_130.1_00285.t1 atgcgcacaagacgatatgctggccagcaggatgcagacctcgtggacctagagcatgccagagtacatttattagacac agaaagttttgagacaacatttggaaagaaggccaatagaaagagaccaaatatcaaagttggagatttacagagtttag ttgaacaagccgagtcttctggtgaaaagtatgatgccaataaagacagtgatcttgtgagggaggatccaggactgaaa gacgaacaaccggaggtcatatttaaagctggtcagtcgaagagggtctggaatgaactctacaaggtaattgattcctc agatgttgtggtacaagtgttagatgccagagatccgctcggtacgcgctgttaccagatagaacggtacatgaagaaag aaaaaccacacaaacatctgatatttgtcctgaacaaggttgatcttatacctgtctgggtgacacaaaagtgggtagcc attttatcccaggagtatcctgctatggctttccatgccagcatcaccaatccatttggtaagggagccttgattaacct cctcagacagtttggaaagcttcacacagacaaaaagcagatcagtgttggttttattgggtaccccaatgtagggaaga gttccattattaacacactgagggctaagaaagtttgtaaggtagctccaatagccggagagaccaaggtatggcagtat gtgaccctaatgaagcgaatctacttagttgactgtccaggagttgtctaccctacagcagaaacccctacagagtttgt tcttaaaggagtggtcatatgttctagagcatcaaatccttcagaggcaatgaaagtagaaataaaagagcttttagaag gtaaggtgcgtgttgaactggtaaagtctcctgaggattatattgctgccatgttagagagagtaaaaccagagtatata aaaaacacatataaagtggacagctggactagtccggaaaacttcctagaacaaatagcaagaaagagtggcaagttact gaagggtggagatgctgacttcagtacagtggcaaaaatgatacttaatgattggcagagaggaaaaatcccgtattttg tcaaaccacctggctgtgaggatgctgactttaaaacagacaaaatggagtcagaaaaggaaaaaaacctagagaaggaa aaagacctagagaaggaaaaagacttacagaaggaaaaagacctagagaagtctgaggtagatataccagaggaggggaa agaaacacctaaagtctgccaaaatctgaagaagatcagagtagaaccagaattcctgcaagaagatgttaaagatgtag tgttagatgataaggatgattctgatgtagaagaagatgaggatgaagatgaggagggagaggaagaagatgaaagcaat gttgatgacagtaaggatgttagtagagacattgatgatgttagtagcagtgtacacggagttaaaagtgacaatatgat tgattgtgacagcacagaagtttgtgatgttgaaggagaagaaagtaaaaagggttctataaaaagtaggactacaaaat cacatgtaaacaagtcagaacagagacataaagaagagagggacactttaaaacatataatgaaaagtggaacatatact gatgtcaaaaacaaagactttattggactctctaaagtgacagagtttcaaaaagctgtccagagtgacaaaagcaaaaa gaaagttaaatcaaagaaaaggagctcagatattgacttgatttgtgctggggaaggttcttctttggatggacagcatg agtcagttctaggagaaacaagcacaaagggaaatgagagtaggaaaaggaaagcaaaactggaggtagcatctagctct agtggaaaatttgttgtacaagaaatggttcctccaaagaaaagaaatttaacaatcccagatggtggcacactatatga ggtgaaggaaagtggaggttcaacaactattgaggttttagcttctaaatccaagaagatgaaggagacatctacttctt tgctttacagagaagacggctggaaagagaagcacgacagaaaaagactggcacccatttctatgaaacggcaaatgtga |
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Protein
| Protein ID | pfu_aug2.0_130.1_00285.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_130.1_00285.t1 MRTRRYAGQQDADLVDLEHARVHLLDTESFETTFGKKANRKRPNIKVGDLQSLVEQAESSGEKYDANKDSDLVREDPGLK DEQPEVIFKAGQSKRVWNELYKVIDSSDVVVQVLDARDPLGTRCYQIERYMKKEKPHKHLIFVLNKVDLIPVWVTQKWVA ILSQEYPAMAFHASITNPFGKGALINLLRQFGKLHTDKKQISVGFIGYPNVGKSSIINTLRAKKVCKVAPIAGETKVWQY VTLMKRIYLVDCPGVVYPTAETPTEFVLKGVVICSRASNPSEAMKVEIKELLEGKVRVELVKSPEDYIAAMLERVKPEYI KNTYKVDSWTSPENFLEQIARKSGKLLKGGDADFSTVAKMILNDWQRGKIPYFVKPPGCEDADFKTDKMESEKEKNLEKE KDLEKEKDLQKEKDLEKSEVDIPEEGKETPKVCQNLKKIRVEPEFLQEDVKDVVLDDKDDSDVEEDEDEDEEGEEEDESN VDDSKDVSRDIDDVSSSVHGVKSDNMIDCDSTEVCDVEGEESKKGSIKSRTTKSHVNKSEQRHKEERDTLKHIMKSGTYT DVKNKDFIGLSKVTEFQKAVQSDKSKKKVKSKKRSSDIDLICAGEGSSLDGQHESVLGETSTKGNESRKRKAKLEVASSS SGKFVVQEMVPPKKRNLTIPDGGTLYEVKESGGSTTIEVLASKSKKMKETSTSLLYREDGWKEKHDRKRLAPISMKRQM |
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