Gene
| Gene Model ID | pfu_aug2.0_130.1_00291 |
|---|---|
| Locus | scaffold130.1 : 210164 ... 225092 : - |
| To GenomeBrowser | scaffold130.1:210164..225092 |
| Genes list of scaffold | scaffold130.1 |
| Synonym | pfu_aug1.0_2568.1_37324 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_130.1_00291.t1 | 3 | 1 | Cadherin | 55 | 90 | 7.4e-07 | 29.3 | 0.17 | 150.0 | 2.6 |
| pfu_aug2.0_130.1_00291.t1 | 3 | 2 | Cadherin | 125 | 224 | 7.4e-07 | 29.3 | 0.00059 | 0.55 | 10.5 |
| pfu_aug2.0_130.1_00291.t1 | 3 | 3 | Cadherin | 264 | 331 | 7.4e-07 | 29.3 | 4.4e-05 | 0.041 | 14.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_130.1_00291.t1 | gi|676428957|ref|XP_009045444.1| | hypothetical protein LOTGIDRAFT_156564 [Lottia gigantea] | 8.0e-22 |
| pfu_aug2.0_130.1_00291.t1 | gi|755955636|ref|XP_011303167.1| | PREDICTED: protocadherin-15 isoform X1 [Fopius arisanus] | 1.0e-15 |
| pfu_aug2.0_130.1_00291.t1 | gi|545805609|ref|XP_005652842.1| | PREDICTED: cadherin-related family member 5 isoform X2 [Sus scrofa] | 2.0e-14 |
| pfu_aug2.0_130.1_00291.t1 | gi|545805606|ref|XP_005652841.1| | PREDICTED: cadherin-related family member 5 isoform X1 [Sus scrofa] | 3.0e-14 |
| pfu_aug2.0_130.1_00291.t1 | gi|391337562|ref|XP_003743136.1| | PREDICTED: protocadherin Fat 2-like [Metaseiulus occidentalis] | 9.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_130.1_00291.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_130.1_00291.t1 atgaggaagatagtttttggtttgactggattctttttaagttgcttcgttgtatgggatgtagcagtactgaatataac cttttctaatgatacagcgtggtcgatgagtatctctagtgttagtgaaggaccagtgaacctgacaatgctcagtggat tcttccatcaaacaaacgacaattatacattcattataacattgatcagggagcttgacaaagaattattttacaatgat tataatgtaaatttacaagttattacaatggaacttcggtgcgaacaaagtggaatccctccaactatctttgaagtccg tatgcgagtagaacctgtgaatgagtaccctcccctgttcgtgtatactccttatgaaatgaatttacccgaggatactc ctgctgcctcgacagtatattcatttacaaatatcacagatgccgatagaccaccggaaacgatggagtatcaattactc agcttttccaattctacagttgatgcttcttctttccttgcattaccacaaggatcaattccagatattgtactgggcac ttctgttgattacgacgacttgagtcagcaagggaagccaacaacatactatcttgtatttcaagtaacggatctgacac acaccgccagtaccacgttaacggtgcacgtaactgacgtggacgacctacctcccgttttcattccatcatgtggacat aattgtgctacccagtacagtgcaaatacccagtctgactatattggaaaattagatttaacaccaaatgatataaaagc acgtgatcaagacagccttaattactccatttcatatactcttgatcaatctagtataaggaaaggatttcgaatagaat cacaaagcggaatcatttggaaagacaaaagcctaccacgaactgatttattgatagtaacggcaacagaaggtgagggc atcaaacgaagcaccactgcaaacgtactagttataattgatggtgatccatcattaccacagacacaggcatctcaaaa caaaaacaatgatgattccttcaagtatgtggccatagctatcgctgtggtgcttgtgttagtgatagctgcttttgtag ctctggtcattgtccttgtgagaaaggccaaacgtgctgagaacaaggtagacattgaaccatcacccaccacctccagg gaaacattgtcagagaaatcaaggagtgtagaaactgtcagtacccatgattgggtgcttcaacagcaagatttaaagcc acccgatgtgtttccggagggaaagaacacacaactaccgccattgaagaagccggaaaaggccgacaagactacggagg ccaagattaaacgaaagaagaaaaagaagaagagaacaattttgaggagacaggcagacgatgaggaaaataatgaaaat gaaataccgcatattacggaaacagaggagagaattcttatagactga |
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Protein
| Protein ID | pfu_aug2.0_130.1_00291.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_130.1_00291.t1 MRKIVFGLTGFFLSCFVVWDVAVLNITFSNDTAWSMSISSVSEGPVNLTMLSGFFHQTNDNYTFIITLIRELDKELFYND YNVNLQVITMELRCEQSGIPPTIFEVRMRVEPVNEYPPLFVYTPYEMNLPEDTPAASTVYSFTNITDADRPPETMEYQLL SFSNSTVDASSFLALPQGSIPDIVLGTSVDYDDLSQQGKPTTYYLVFQVTDLTHTASTTLTVHVTDVDDLPPVFIPSCGH NCATQYSANTQSDYIGKLDLTPNDIKARDQDSLNYSISYTLDQSSIRKGFRIESQSGIIWKDKSLPRTDLLIVTATEGEG IKRSTTANVLVIIDGDPSLPQTQASQNKNNDDSFKYVAIAIAVVLVLVIAAFVALVIVLVRKAKRAENKVDIEPSPTTSR ETLSEKSRSVETVSTHDWVLQQQDLKPPDVFPEGKNTQLPPLKKPEKADKTTEAKIKRKKKKKKRTILRRQADDEENNEN EIPHITETEERILID |
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