Gene
| Gene Model ID | pfu_aug2.0_1302.1_08304 |
|---|---|
| Locus | scaffold1302.1 : 76926 ... 83898 : + |
| To GenomeBrowser | scaffold1302.1:76926..83898 |
| Genes list of scaffold | scaffold1302.1 |
| Synonym | pfu_aug1.0_85159.1_63947 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| uroporphyrinogen decarboxylase | GO:0006783 GO:0016831 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1302.1_08304.t1 | 2 | 1 | URO-D | 1 | 55 | 2.2e-36 | 125.4 | 2.5e-12 | 1.8e-08 | 33.6 |
| pfu_aug2.0_1302.1_08304.t1 | 2 | 2 | URO-D | 50 | 150 | 2.2e-36 | 125.4 | 1.0e-30 | 7.7e-27 | 94.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1302.1_08304.t1 | gi|674079158|ref|XP_008847086.1| | PREDICTED: uroporphyrinogen decarboxylase isoform X3 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_1302.1_08304.t1 | gi|545207835|ref|XP_005607163.1| | PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Equus caballus] | 0.0 |
| pfu_aug2.0_1302.1_08304.t1 | gi|675720049|ref|XP_008963509.1| | PREDICTED: uroporphyrinogen decarboxylase isoform X4 [Pan paniscus] | 0.0 |
| pfu_aug2.0_1302.1_08304.t1 | gi|676433246|ref|XP_009046837.1| | hypothetical protein LOTGIDRAFT_205092 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1302.1_08304.t1 | gi|524898887|ref|XP_005105887.1| | PREDICTED: uroporphyrinogen decarboxylase-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1302.1_08304.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1302.1_08304.t1 atgatagatggaggatctacggtgccactacccaaggcccgccgatggctacaagagcaccctgatgacagcaggaggct ccttgacatacttacagaaaaagtcattgattaccttgtctgccaaataaaggctggtgctcaggttgtgtttgccaaag atgcccattttgccatagaggagttaagtaatgctggatatgaagttgtatcaatagactggactgtaagacctacacat gcaaggagactggtgggaacaaatgtaacactacagggaaacctagatcccacaatgttatatgctccagagagtgaatt gaagcatgcggtaaaggagatgttagagaagtttggtacaaatcggtatatagctaacctcggacacggtgtaaataaag acgtagatcctgaacgtgttaaaacatttgtaaatgctgttcacatgtattcagaggatataaatgctttgaaataa |
|
Protein
| Protein ID | pfu_aug2.0_1302.1_08304.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1302.1_08304.t1 MIDGGSTVPLPKARRWLQEHPDDSRRLLDILTEKVIDYLVCQIKAGAQVVFAKDAHFAIEELSNAGYEVVSIDWTVRPTH ARRLVGTNVTLQGNLDPTMLYAPESELKHAVKEMLEKFGTNRYIANLGHGVNKDVDPERVKTFVNAVHMYSEDINALK |
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