Gene
| Gene Model ID | pfu_aug2.0_1305.1_18252 |
|---|---|
| Locus | scaffold1305.1 : 114736 ... 138207 : + |
| To GenomeBrowser | scaffold1305.1:114736..138207 |
| Genes list of scaffold | scaffold1305.1 |
| Synonym | pfu_aug1.0_82771.1_05982 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1305.1_18252.t1 | 4 | 1 | MAM | 21 | 71 | 1.1e-13 | 51.2 | 0.75 | 1200.0 | -1.0 |
| pfu_aug2.0_1305.1_18252.t1 | 3 | 1 | Lectin_C | 81 | 152 | 1.2e-12 | 48.3 | 6.1e-09 | 1.0e-05 | 26.1 |
| pfu_aug2.0_1305.1_18252.t1 | 4 | 2 | MAM | 194 | 209 | 1.1e-13 | 51.2 | 3.1 | 5000.0 | -2.9 |
| pfu_aug2.0_1305.1_18252.t1 | 4 | 3 | MAM | 256 | 367 | 1.1e-13 | 51.2 | 1.8e-14 | 3.0e-11 | 43.3 |
| pfu_aug2.0_1305.1_18252.t1 | 3 | 2 | Lectin_C | 257 | 281 | 1.2e-12 | 48.3 | 4.4 | 7300.0 | -2.4 |
| pfu_aug2.0_1305.1_18252.t1 | 4 | 4 | MAM | 389 | 440 | 1.1e-13 | 51.2 | 0.013 | 21.0 | 4.8 |
| pfu_aug2.0_1305.1_18252.t1 | 3 | 3 | Lectin_C | 452 | 538 | 1.2e-12 | 48.3 | 5.9e-09 | 9.7e-06 | 26.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1305.1_18252.t1 | gi|524897791|ref|XP_005105352.1| | PREDICTED: uncharacterized protein LOC101862133 [Aplysia californica] | 1.0e-13 |
| pfu_aug2.0_1305.1_18252.t1 | gi|530604719|ref|XP_005294092.1| | PREDICTED: pulmonary surfactant-associated protein D-like [Chrysemys picta bellii] | 3.0e-09 |
| pfu_aug2.0_1305.1_18252.t1 | gi|170041461|ref|XP_001848480.1| | salivary C-type lectin [Culex quinquefasciatus] | 1.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_1305.1_18252.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1305.1_18252.t1 atggcgtgtgtatcacacatcgttggtggtcttctttttctagccctttctgttaatgcggccaccccaacagacaaatg tatgtccatgcacttattccaagccacctacgacaccatgcgagaaaaggctgaagaaatgaacaatttggtcaaacaaa tgaaaagtaaccttgatcagtcattggagcaagagtgtgggcacctaggaaatcaagagatgacacaagcagctgctttg ggcatatggacccggggtaacgatatcatgaaggagggcagctacgcttgggcgggtacgatcggggatccaacgccttt ctcttacagtaactggcatcctggtcaacccaacaatatcggaggagtacaagattgtgtagccatacagtatccaaccc aagatttccaatggggagacgagaactgtggagatgcgcacgcctttatatgtgaggctgaatacacaagcagtcctaca cctgctgggcatactccgaatatcggtttcactttctccgataaaatgttgataacatctttaattttggggaatctttt ccttctggctttttctgccagtactcctaaagataaatgtatgtcaatgcatgttttccaaaccacgtacaatgctgtga aggagaaaatccaggaaatgaacacgttagcagaacgtctgaaagaaaaactggaccagtcaattgacgacacatgtgag agtttggcaaatcaagtgacatctcatccgtacaatctaacatactgtgattttgaggagggatatgagaggtgtggcta tacccaggggacaggggattatggtagttggaagttagataaatcttactacgaagaccatactattggcattaaatctg gtcaacttttacaaagttacactacctcaaatagttatgccactcggatggtatcaccggagttccaacctacagcagcg tattgcatccgattcttctataagacgccaaatacaagaaattacacgggaaacttcagtatatatctccaggagggtgc tgatctaggcgttccagtatggcggaagagtattgttacatcaaattggacactgggagaattcagtcctgatccagaat acctacaccagccattcaaggagggtgctgatctaggcgttccagtatggcggaagagtattgttacatcaaattggaca ctgggagagttcagtcctgatccagaatacctacgcaagccattcaagatcgtctttgaagacaaagggaaccattatat tttgattgatgatattatggtgtataacgtcggctgtaatagtccagacctggcagcggcggcagatttcggactatgga cacgtggtaatgacattgataaagagggaaactttgtatgggcggagaatcacgggcaaccaaaggcattctcctacagg tcagataacgttattgataattttcgggcaaagtgtataccgaatagcaactggcgctctgggcagcctaacaatatagg tgacgatcaagactgtgttcttctccaatacccccttactggactcaagtggtctgacgtcaactgctcggagaaacact cattcatctgtgaagctgcatacagtcatgtgacaggacattcttccataggaaatcctttcggttaa |
|
Protein
| Protein ID | pfu_aug2.0_1305.1_18252.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1305.1_18252.t1 MACVSHIVGGLLFLALSVNAATPTDKCMSMHLFQATYDTMREKAEEMNNLVKQMKSNLDQSLEQECGHLGNQEMTQAAAL GIWTRGNDIMKEGSYAWAGTIGDPTPFSYSNWHPGQPNNIGGVQDCVAIQYPTQDFQWGDENCGDAHAFICEAEYTSSPT PAGHTPNIGFTFSDKMLITSLILGNLFLLAFSASTPKDKCMSMHVFQTTYNAVKEKIQEMNTLAERLKEKLDQSIDDTCE SLANQVTSHPYNLTYCDFEEGYERCGYTQGTGDYGSWKLDKSYYEDHTIGIKSGQLLQSYTTSNSYATRMVSPEFQPTAA YCIRFFYKTPNTRNYTGNFSIYLQEGADLGVPVWRKSIVTSNWTLGEFSPDPEYLHQPFKEGADLGVPVWRKSIVTSNWT LGEFSPDPEYLRKPFKIVFEDKGNHYILIDDIMVYNVGCNSPDLAAAADFGLWTRGNDIDKEGNFVWAENHGQPKAFSYR SDNVIDNFRAKCIPNSNWRSGQPNNIGDDQDCVLLQYPLTGLKWSDVNCSEKHSFICEAAYSHVTGHSSIGNPFG |
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