Gene
| Gene Model ID | pfu_aug2.0_131.1_03680 |
|---|---|
| Locus | scaffold131.1 : 183184 ... 195003 : - |
| To GenomeBrowser | scaffold131.1:183184..195003 |
| Genes list of scaffold | scaffold131.1 |
| Synonym | pfu_aug1.0_39360.1_70311 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ino80 complex subunit d- partial | GO:0005634 GO:0006281 GO:0006310 GO:0006355 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_131.1_03680.t1 | 2 | 1 | zf-C3Hc3H | 18 | 80 | 2.8e-27 | 94.5 | 1.4e-17 | 1.1e-13 | 51.0 |
| pfu_aug2.0_131.1_03680.t1 | 2 | 2 | zf-C3Hc3H | 687 | 751 | 2.8e-27 | 94.5 | 6.0e-17 | 4.5e-13 | 49.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_131.1_03680.t1 | gi|524912542|ref|XP_005111118.1| | PREDICTED: flocculation protein FLO11-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_131.1_03680.t1 | gi|676481796|ref|XP_009062496.1| | hypothetical protein LOTGIDRAFT_166800 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_131.1_03680.t1 | gi|694658489|ref|XP_009484827.1| | PREDICTED: INO80 complex subunit D-like, partial [Pelecanus crispus] | 6.0e-35 |
| pfu_aug2.0_131.1_03680.t1 | gi|705685320|ref|XP_010120221.1| | PREDICTED: INO80 complex subunit D-like, partial [Chlamydotis macqueenii] | 7.0e-35 |
| pfu_aug2.0_131.1_03680.t1 | gi|704169872|ref|XP_010131373.1| | PREDICTED: INO80 complex subunit D-like, partial [Buceros rhinoceros silvestris] | 1.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_131.1_03680.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_131.1_03680.t1 atgtacgaggggaaaaatatccactactcctctccagataaaaagccgttatgttcgttcagtggcaaggtctgtaacca gcatcgattaaacggctacggcttctgtgtgcggcacatcctagaggatcctcatgccccgtttaaaaggtgtgcgtacg tggctaagtccagcaagcagacatgtactcaggccataccacaacacgaggaaagaaagtactgcaacaatcacatgcag gtgttggggatgctgccaagaaaggaaagaaaaaagaaggaaaaagaaacaaaattagcagaaactccagtacatgtacc cagagatccacaggttatcagagacaacagaaagtcatttgaagatcgagtcaaatctaagtttaatacgtcaaaattac atgtcaaaagtgaagtattgaaaaatgatgtgggattcggagaggaccccgatgatccatatgcatttcccgatcctagc ggagacgctaagaattatgggacaaatggacctgtcagcaatttaccatcatctagtccttactccgaggctccgttgtc ggtcagttcacagggttctcatggatcaaaatcaccaggggacggaggaagtggggtgtcgtcaattgcgaggctttatc cagaactggcggaaaagttggaaaaggtcaagccaaaggccgagccagtagtaaaggggaaggaaaaaggaaaagctaaa agttcaaggacattacatcgacttcagacaaaaatagctcaaaataggattaaagataagatgaagaggaatcaggagtc taattcacagtcacagtcaccgtatcatgggtacggctccatgggtcacgttagccctcacacacctacaggtggtatga atcattatgatatagatatgatggaaaaaacactgccaaataatatagacaacttgaaaccgatcagcagtcagccacct tcctacccccctgtgtacagccaggttgtaaacgatgcacggaagggctatccctttcaaaatcttcacccaaacttagt gccaagcccgcagtcagatttattacctagccctagtacgccagagtatgtgcatgcaggtattccccaggggattcccc acggagttccattggaatcgttacctggaatgccaaactctggatataggtcacatagtcgagcagaatcaatttctatg acgagtagtggcagtgttaccatggcaacgcatggacagatcaaacaaactgcatgtaaacctccaccacccccttacac taaaagtgtcatggaaaatcggagctcggtcagtagtgttaccgtggcaacaacagtgtcaacgatggcatcaagttatg tgaacagtacctcaaataggacgacaaattgtgcatcagacgtaaaaaatcccccagtgacaaaagtagcgttgtacggt ggtctacctcccccacctccttatacgagcaaagttcagaaaaacgtgaagtcaaaacggcaatcttatactcccctctc tatagctgtcgttcctcacctagagaaatcagacattaccaagtcacggaaagtcaaacatatagtggaagagaatgata tagccaaaaagttaaagacggagtctagcaggatgttttacaaacgttacgtgaataaaagacagtttgatcacagtttt atgggctcaggtttgaatagctcagaggaggaagattctagtgaaaatgaggaagaaaacatgttaccatggcaacctcg gtggtttatagaatcttcagatgatgaagctttagaggaagatgaacaagacgatgctttacgtacaacaaaactggcgt tgctccgggccaggttacgacgtcagtgtttccagtctcgtacttctgcaaagtcaaacgtttctgagcaccagaacaac aatagtacgacactggctttaatacaagctatccgagagaacccgaagaacactgtggaagctctaaacgtcatagaaag acaacctgagagagtggtcgacaagtacaagttacgaggccttctccctcggcagtgctgtaacaaaaacaatgaaaacg tgcaatgcaaaaatcctgtccttccctacaccaatcactgtctcaaacatgttatgtacaatgtagaccagcagatattt gattattgtacggctaagttcgctgataacacacagtgttgtatgccggtatttgatatcagacatgaactaccactctg tatggaacacgctgttaaagctgtttcacaaaatgttgtattgacagctggaaatggcacgataccaaatcacatcacaa tacaaggaggtctggcaaataaagaggtgatcaaatcacatttgctaggcaatcaaggtcagactttaccaatggcacgt gttgcatggccggtcaacatcagtactgtcaacaattaccaaaatggatatcccgtacatactttcatacacgaaggtgg tgacgcagcaacattgaacttaaaatttcaaaatttgaatgctcaacaggccaaccaccatcaccatggtaacaatgtgg atatgacccagataagccaggtcacgcctgacttaacacagcagtatcagttggtgacacattccgctggtgccccgggt tccgtgttagtgagggcgccacttcagatatttcagaacgctgctcaacaagcgggattttccgctccgtcacgtctccc tccgcctttcagtgccaccagcgggaatggctcctag |
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Protein
| Protein ID | pfu_aug2.0_131.1_03680.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_131.1_03680.t1 MYEGKNIHYSSPDKKPLCSFSGKVCNQHRLNGYGFCVRHILEDPHAPFKRCAYVAKSSKQTCTQAIPQHEERKYCNNHMQ VLGMLPRKERKKKEKETKLAETPVHVPRDPQVIRDNRKSFEDRVKSKFNTSKLHVKSEVLKNDVGFGEDPDDPYAFPDPS GDAKNYGTNGPVSNLPSSSPYSEAPLSVSSQGSHGSKSPGDGGSGVSSIARLYPELAEKLEKVKPKAEPVVKGKEKGKAK SSRTLHRLQTKIAQNRIKDKMKRNQESNSQSQSPYHGYGSMGHVSPHTPTGGMNHYDIDMMEKTLPNNIDNLKPISSQPP SYPPVYSQVVNDARKGYPFQNLHPNLVPSPQSDLLPSPSTPEYVHAGIPQGIPHGVPLESLPGMPNSGYRSHSRAESISM TSSGSVTMATHGQIKQTACKPPPPPYTKSVMENRSSVSSVTVATTVSTMASSYVNSTSNRTTNCASDVKNPPVTKVALYG GLPPPPPYTSKVQKNVKSKRQSYTPLSIAVVPHLEKSDITKSRKVKHIVEENDIAKKLKTESSRMFYKRYVNKRQFDHSF MGSGLNSSEEEDSSENEEENMLPWQPRWFIESSDDEALEEDEQDDALRTTKLALLRARLRRQCFQSRTSAKSNVSEHQNN NSTTLALIQAIRENPKNTVEALNVIERQPERVVDKYKLRGLLPRQCCNKNNENVQCKNPVLPYTNHCLKHVMYNVDQQIF DYCTAKFADNTQCCMPVFDIRHELPLCMEHAVKAVSQNVVLTAGNGTIPNHITIQGGLANKEVIKSHLLGNQGQTLPMAR VAWPVNISTVNNYQNGYPVHTFIHEGGDAATLNLKFQNLNAQQANHHHHGNNVDMTQISQVTPDLTQQYQLVTHSAGAPG SVLVRAPLQIFQNAAQQAGFSAPSRLPPPFSATSGNGS |
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