Gene
| Gene Model ID | pfu_aug2.0_1311.1_04956 |
|---|---|
| Locus | scaffold1311.1 : 50973 ... 52551 : - |
| To GenomeBrowser | scaffold1311.1:50973..52551 |
| Genes list of scaffold | scaffold1311.1 |
| Synonym | pfu_aug1.0_4665.1_30760 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| small conductance calcium-activated potassium channel | GO:0005516 GO:0016021 GO:0016286 GO:0071805 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1311.1_04956.t1 | 2 | 1 | SK_channel | 52 | 168 | 8.9e-33 | 112.6 | 4.2e-36 | 8.9e-33 | 112.6 |
| pfu_aug2.0_1311.1_04956.t1 | 2 | 1 | Ion_trans_2 | 80 | 111 | 1.7e-15 | 56.4 | 1.3 | 2800.0 | -1.9 |
| pfu_aug2.0_1311.1_04956.t1 | 2 | 2 | SK_channel | 243 | 243 | 8.9e-33 | 112.6 | 1.2 | 2500.0 | -1.8 |
| pfu_aug2.0_1311.1_04956.t1 | 2 | 2 | Ion_trans_2 | 247 | 327 | 1.7e-15 | 56.4 | 8.1e-19 | 1.7e-15 | 56.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1311.1_04956.t1 | gi|676445868|ref|XP_009050893.1| | hypothetical protein LOTGIDRAFT_114691 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1311.1_04956.t1 | gi|676445884|ref|XP_009050898.1| | hypothetical protein LOTGIDRAFT_114336 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1311.1_04956.t1 | gi|676436403|ref|XP_009047871.1| | hypothetical protein LOTGIDRAFT_111965 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1311.1_04956.t1 | gi|676445877|ref|XP_009050896.1| | hypothetical protein LOTGIDRAFT_213821 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1311.1_04956.t1 | gi|260802120|ref|XP_002595941.1| | hypothetical protein BRAFLDRAFT_235511 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1311.1_04956.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1311.1_04956.t1 atgagtgggaacaccatagttgaggacccgggaattccactggtggaccgaaggaacggcaagtattcaaaatacgtgga ggaggacgccaacagccaggggacagactacggcagcctggtcatgtcatcaaaatttgataatatcagttatcgactta gtcacagaaaagttctcctaaagaggcgagtggtcatcgtgaacttagagttcgtcttcgctttcttaggcattgtcatc atgttggtcgaaacggaactttactttgcaaagataatcaccaaatcttccattgtgtccattattctcaagtcatgcat atcatttacaaccttgtttttgatcatgttcatcttggcataccacgtggttggaattcaactgcatatgacggacaaca gcttagaggactggcgattggccgtgacctttccttggacatatctaaaaatagcggtagagattttggtctgtattgtt caccccattccaggaaatattgaaatttacgccaacgatccgaaaggaaagtctcagattgtttctatagatgcaattct atcgatacttatgcttctccgcatatacttactagccaaattcatggtcatccatagcaagctattgacaagtacagcaa ctcaaagtctaggtgccctcaacaaggtcaagatcaacgcagccttcgttttcaaagctttaatgtcctcaaatccggga actttactcatagttataatgctagccattctactgattgacacgtgggcaatgcgcacgtgcgagacttattatcaccc ggacgaagaacactcggactttttcaatgcaatgtggctggtggccattacttttctaactgtgggatatggagatattt atccgaacagctattgcggccggtttgtttccgtggcaacaggccttatgggggttggtacaacggctcttcttgttgct gttttggcctctaaacttgaacagtcacgagccgaaaaatatgtgcataattttgttgcgcgcgctcagcttgataaaga gaggaagaacgccgcagctgacgtcatcaagtacgtattacaattatggcgtctgaagaaaaataatattgataatactg gaaaaagaatacgactgcatggaaaactactccaagcaatttctacaatgaaagaggccaaaaatgaaaaatcttccatt ggggagacagccattggttttattgaggtttccaaggcgattacggatgtatatgatgtcgtagaaggtttgcaagaaga acagaacgaaatgaaaacgaaagtagaagaaattgaaaagactttaatgactctggattctaaattagactctattgttt ctgcagttgtcaaacgctga |
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Protein
| Protein ID | pfu_aug2.0_1311.1_04956.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1311.1_04956.t1 MSGNTIVEDPGIPLVDRRNGKYSKYVEEDANSQGTDYGSLVMSSKFDNISYRLSHRKVLLKRRVVIVNLEFVFAFLGIVI MLVETELYFAKIITKSSIVSIILKSCISFTTLFLIMFILAYHVVGIQLHMTDNSLEDWRLAVTFPWTYLKIAVEILVCIV HPIPGNIEIYANDPKGKSQIVSIDAILSILMLLRIYLLAKFMVIHSKLLTSTATQSLGALNKVKINAAFVFKALMSSNPG TLLIVIMLAILLIDTWAMRTCETYYHPDEEHSDFFNAMWLVAITFLTVGYGDIYPNSYCGRFVSVATGLMGVGTTALLVA VLASKLEQSRAEKYVHNFVARAQLDKERKNAAADVIKYVLQLWRLKKNNIDNTGKRIRLHGKLLQAISTMKEAKNEKSSI GETAIGFIEVSKAITDVYDVVEGLQEEQNEMKTKVEEIEKTLMTLDSKLDSIVSAVVKR |
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