Gene
| Gene Model ID | pfu_aug2.0_1311.1_04959 |
|---|---|
| Locus | scaffold1311.1 : 151850 ... 170145 : - |
| To GenomeBrowser | scaffold1311.1:151850..170145 |
| Genes list of scaffold | scaffold1311.1 |
| Synonym | pfu_aug1.0_3472.1_37605 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx27 | GO:0004386 GO:0005524 GO:0008152 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1311.1_04959.t1 | 2 | 1 | DEAD | 136 | 306 | 2.8026e-45 | 153.9 | 0.0 | 4.2039e-45 | 153.1 |
| pfu_aug2.0_1311.1_04959.t1 | 2 | 1 | Helicase_C | 273 | 300 | 1.2e-25 | 89.1 | 1.5 | 7400.0 | -3.2 |
| pfu_aug2.0_1311.1_04959.t1 | 2 | 2 | Helicase_C | 380 | 452 | 1.2e-25 | 89.1 | 8.6e-29 | 4.2e-25 | 87.4 |
| pfu_aug2.0_1311.1_04959.t1 | 2 | 2 | DEAD | 381 | 414 | 2.8026e-45 | 153.9 | 0.24 | 1200.0 | -1.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1311.1_04959.t1 | gi|524898320|ref|XP_005105610.1| | PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1311.1_04959.t1 | gi|260798638|ref|XP_002594307.1| | hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1311.1_04959.t1 | gi|57529371|ref|NP_001006293.1| | probable ATP-dependent RNA helicase DDX27 [Gallus gallus] | 0.0 |
| pfu_aug2.0_1311.1_04959.t1 | gi|586454868|ref|XP_006839259.1| | PREDICTED: probable ATP-dependent RNA helicase DDX27 [Chrysochloris asiatica] | 0.0 |
| pfu_aug2.0_1311.1_04959.t1 | gi|677994014|ref|XP_009075982.1| | PREDICTED: probable ATP-dependent RNA helicase DDX27, partial [Acanthisitta chloris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1311.1_04959.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1311.1_04959.t1 ctagatccaagcaaatcgtttgattttgactttgcattgaaacatgccaagaaaaaacaagcagcaacaacacttgatga aaaaattgccaagacaaggaggcttaacaaaaagcaagcaaaagaggttgaagctttggggagtgacgaagaagaaatag aggaagatatagatgattcttcagatgaagaaatgagatcagatacaataaaaacaaaagagaagaaacagaaaaagaag aaaaagaaaaagaggaagaaagaagattctgacgaggaagaggagaaagagaaaatagaattttcagaaagcattgatgc agtagatgagaacatttcctttcaagacatgaatgtctcacgaccactaatgaagggtctgagtcatatgaactttgata aacctacacccatacaatcggcaactattcctgtagcgttactcggcaaagatctgtgtgcgtgtgcagtcactgggtca ggtaaaacggtagcttttatgttaccgatcctagaacggttgttatacagacccaagcagcaggccatgacccgcgtact cgtcctggtaccaacaagagaattagctgtccaggttcatactgtagctcggcagcttgctcagttcaccaatatagata tagtgttatctgctggtggattggacataaaggcacaggaggcagctttacgtatgggacctgatgttgtcatagcaacg cctggccgtctgattgatcacctgcaaaattctcccgtatttaacctcaataatatagaaattctggtgctagatgaagc tgacagaatgttagacgagtattttgctgagcagatgaaggagatcattcgtcagtgttctcgttcacgacagacgatgt tgttctcggccaccatgacagaggctgtgcaggacttggcagcggtgtcgctcaaaaacccggttaaaatcttcgtaaat gagaatacggatgtggctcttggtttacgacaggagtttatcagggtcagggccaatagggaaggtgatagagaggccat tgtttgtgcattagtaagtcggaccttcagagaccactgtattgtgttcatacaaaccaagaaacaggcacatcgtatgc atattgtacttggattgctgggtattaacgtaggggagctacatggaaatctgtcacaggcacagagattggagacgtta aagagatttaagaatgcagagattgatgttttactggccacggatctggctgcacgtggtctggacattcaaggggtcaa aactgtcataaattttacgatgccaaatacaataaagcattacgtacacagagtgggtagaactgctagagctggaaaga aaggaagatctgttactctagttggagaacaggagagaaaattgctgaaagaagttgtgaaaaaggctagaactccatta aaaacaaggatagtcccccaggaggtaataactaaatacaagaacaaaataaacagtctggaaaaggacatcaaagaaat agagaaagaggaggacgaggagagggttacaagagctacggaaaatcaaatgaataaggcaaaaagactgctggagggag gtaaagagaaggacagtatgaagagaacatggttccaaactcacaaagaaagacagatggaaaaagatgccttgagatta ggtgattataacaaacttccaaggaagaagaggagaatgaatgaaattcagaagcaactgacagccgaggatagagttaa aaatgagatccagaagtctcgggagtattctataagagttggaaagaaagcattcaaacctaaaaaattacgagcattta gtgagaatgaggatagaaataataatgttcatggacagaaaggcaagaagcagaagaaaaagaataagaaatctgctttt gatgaagaattgacgagtgccactagttcatcgcttaaaaaatatagggcaggaccttcataccaggagagaaaagaaat gggaatgccggtaaagaaaaatttcaaaggaaaaaagcaacgacgagacaaaatagaaaactcacaccaagagggcgaag atttaaacaaagcatgtccttggttagatggtcaagattggtccagtcaaaagtatcattctggacaaagaaacgtcaca ttttgtgattctgatcgtgatgaatacaacaaaggcaacacaagcgtattgtccccactcagttctatgcaatag |
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Protein
| Protein ID | pfu_aug2.0_1311.1_04959.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1311.1_04959.t1 LDPSKSFDFDFALKHAKKKQAATTLDEKIAKTRRLNKKQAKEVEALGSDEEEIEEDIDDSSDEEMRSDTIKTKEKKQKKK KKKKRKKEDSDEEEEKEKIEFSESIDAVDENISFQDMNVSRPLMKGLSHMNFDKPTPIQSATIPVALLGKDLCACAVTGS GKTVAFMLPILERLLYRPKQQAMTRVLVLVPTRELAVQVHTVARQLAQFTNIDIVLSAGGLDIKAQEAALRMGPDVVIAT PGRLIDHLQNSPVFNLNNIEILVLDEADRMLDEYFAEQMKEIIRQCSRSRQTMLFSATMTEAVQDLAAVSLKNPVKIFVN ENTDVALGLRQEFIRVRANREGDREAIVCALVSRTFRDHCIVFIQTKKQAHRMHIVLGLLGINVGELHGNLSQAQRLETL KRFKNAEIDVLLATDLAARGLDIQGVKTVINFTMPNTIKHYVHRVGRTARAGKKGRSVTLVGEQERKLLKEVVKKARTPL KTRIVPQEVITKYKNKINSLEKDIKEIEKEEDEERVTRATENQMNKAKRLLEGGKEKDSMKRTWFQTHKERQMEKDALRL GDYNKLPRKKRRMNEIQKQLTAEDRVKNEIQKSREYSIRVGKKAFKPKKLRAFSENEDRNNNVHGQKGKKQKKKNKKSAF DEELTSATSSSLKKYRAGPSYQERKEMGMPVKKNFKGKKQRRDKIENSHQEGEDLNKACPWLDGQDWSSQKYHSGQRNVT FCDSDRDEYNKGNTSVLSPLSSMQ |
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