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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_1314.1_14958
Locus scaffold1314.1 : 106316 ... 127640 : +
To GenomeBrowser scaffold1314.1:106316..127640
Genes list of scaffold scaffold1314.1
Synonym pfu_aug1.0_3816.1_01542

Manual annotation
Annotation by Blast2GO
Annotation GO
dna mismatch repair protein msh3 GO:0000228 GO:0000403 GO:0000404 GO:0000406 GO:0000710 GO:0003697 GO:0005654 GO:0007131 GO:0008094 GO:0016020 GO:0016447 GO:0019899 GO:0032137 GO:0032142 GO:0032181 GO:0032302 GO:0032357 GO:0042803 GO:0043570 GO:0045910 GO:0051096

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_1314.1_14958.t1 1 1 MutS_I 219 330 8.9e-30 103.0 4.6e-33 2.3e-29 101.7
pfu_aug2.0_1314.1_14958.t1 2 1 MutS_II 353 495 2.3e-16 60.1 4.6e-20 2.3e-16 60.1
pfu_aug2.0_1314.1_14958.t1 3 1 MutS_III 412 457 4.3e-30 105.0 0.6 3000.0 -2.3
pfu_aug2.0_1314.1_14958.t1 3 2 MutS_III 493 700 4.3e-30 105.0 0.5 2500.0 -2.0
pfu_aug2.0_1314.1_14958.t1 2 2 MutS_II 672 723 2.3e-16 60.1 0.17 820.0 0.0
pfu_aug2.0_1314.1_14958.t1 3 3 MutS_III 736 928 4.3e-30 105.0 8.7e-34 4.3e-30 105.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_1314.1_14958.t1 gi|114599394|ref|XP_001134751.1| PREDICTED: DNA mismatch repair protein Msh3 [Pan troglodytes] 0.0
pfu_aug2.0_1314.1_14958.t1 gi|40225466|gb|AAH11817.1| MSH3 protein, partial [Homo sapiens] 0.0
pfu_aug2.0_1314.1_14958.t1 gi|602723821|ref|XP_007472047.1| PREDICTED: DNA mismatch repair protein Msh3-like, partial [Lipotes vexillifer] 0.0
pfu_aug2.0_1314.1_14958.t1 gi|694910554|ref|XP_009447204.1| PREDICTED: DNA mismatch repair protein Msh3 [Pan troglodytes] 0.0
pfu_aug2.0_1314.1_14958.t1 gi|544438029|ref|XP_005557341.1| PREDICTED: DNA mismatch repair protein Msh3 isoform X2 [Macaca fascicularis] 0.0

Transcript
Transcript IDpfu_aug2.0_1314.1_14958.t1
Definition-
>pfu_aug2.0_1314.1_14958.t1
atgaaaggtgttaatttaacaaaactgaaagcccgtgcccaatcgaaaagtacaaatattgacggagtaaattcggaaaa
gacacaggctactctttctaagttctttcgttccagcagtccgtccattggcagccgaaatacgtcaattgctgaggaga
atgatttatcagtacatgttggcaccaaaaggtctagagaaactgatcatatgagtccagattctagatcagctaagaaa
tcatgtcctccctccaatacagataatgcaacaaaagatttaggcagcaccagtggaacatctagtacgaaagatgacat
tcaaagtgatactgggactgacagaaagttgtctgagaaaacaactaggaaacttctacaataccagtccaatgcaaatt
ctgaactggaggtaaaagagtgcaaacacatccctttaagccatttaattaaggcaaggcaaggagatgatagggaggat
aaacatatgtgcttgggtgtagataacaatggaaaagatgccgactccgattgtgaaattatagatgacatcagtaaacc
ttctgcatcatcatcatccactccaacactgagaaaatttactaacagtaaaagtaaattggaagcactgaacaagagga
ctaaaactaaatacacacctctggaacagcagtatgtggaaatcaaaggaaaacatccaggtgcagttttattgattgag
tgtggttataagtatagattcttcggtgaagacgcagagattgcagctaaagtcctgaaaatattttgccatctggatca
caatttccagacagcgagcattcctgtacatagactgtttgtccatgttaggagacttgtagctgcgggttacaaggtag
gagttgtaaaacagacggaaacagcagctctgaaagcagctggggaaaataggagtgctccattcaaacgacaactcacc
gctatgtatacaaagtctactctgattggagaagatattgagagttgttcagaggaagtggaagtttccatggataccag
taatgtaaactgtaccctgttatgtgtgtatgacttacccatgcaagcaaaggacaaggaacaaacaataggaattctgg
cagtgaagccgtccactggtaatgtcgtctatgatagttttgttgacacagagctacgtacagaattagataccagaata
acacacactcaacctgtggagatgattatacctaaaaccctcacagagaagacgcagaagtttatagacgacactgttaa
atatagttcaactgatgatgacaaaattcgagtggaacaccttgatgacagagtctttgagtattctgaagcctttcaga
cagtgtctgaattttactcctctgacaccgatcagtaccaactacaaagtgtcatcaacctacctcattctgtgatatgt
tgtttatctgctatgataacgtacctcaagcagtttaatctggatagaatacttcagatgaataggagtaaggaaggaaa
gggtcacgaggagctggttaacaagttacaatacacagtacaacaattacaggaaaaaatcaaagctcaggaaatggcac
tcatggatgccaacagaaagggggagagtagtagtagagagaagtatctgtccgacacgacccttaaccaggtacgagct
gtgctgacagatgtcgagaagaagcgagggcggccattttttgactcagacccggtggatcggcaggtacctggtatgct
ggtccacacactggagagatgtgtacaggaattcactacggataataaccaaaaaaagtgtaaaatagaagagcttgaag
gtgaaatcaagtcgctgaagcagaatctgagtcaagataaagagactttattcaaagaacagcaagataagattactaac
atggcccacgaacacgagagacaaatgttgacgatgcaagaaaaggccaataactctaggaagcaagctacgcaattaca
acaacaacttgcattaatagattcaactgatgatgacaaaattcgagtggaacatcttgatgacagagtctttgagtatt
ctgaagcctttcagacagtgtctgaattttactcctctgacactgcatttgagttcaaattttccctcttgttgagtgcc
ttatcaaaatttaccactgaatctacttacctaaaattaccaggtaaaacaaccaggaaccttgaactattccagaacca
aacaaacttacaagagaggggctcattattctgggtcctcaatcatactgttaccaaatatggaaaccgcatgcttagga
catggttgtcctgccctcttcttgatgtcacgaaaataaaacaacgtcaagaagcagtggaggaactgtcttttgaggca
aagaaagggacatggggacgattacaaggtgctttatcaagaactccagacttggagaaaggtctctgctcaattttcta
taacaagtgcagtatccaggagttttattctgtggtaaagtccctctcagtacttcatactgagttcaaggttctgtcac
agtctatagacagtgtgaaatcagaagttttgaaaaccattatttgtgaagttgaagatcttataaatggtatcgacaat
tacagtgatatgcttcatgaagacagtgtaagagaaaatgacaaaacaaatatattcaaagatgaaagcatctttccatc
agttttgaagagaaaatctgccattcaagatgtaatgaaggacttacaggaacataggagagaagttagattgttattaa
agcagcctgcccttgactatacaactgtcatgggaactgaatatcttattgaggtcaaaaatgccataataaaagtggta
ccccaagactggacaaaaataagcagcgtattgagactcatcagccaagggtcaaggtcgagtagtcaagattatattcc
acaggcaaaatatggactaccaagactgtga

Protein
Protein IDpfu_aug2.0_1314.1_14958.t1
Definition-
>pfu_aug2.0_1314.1_14958.t1
MKGVNLTKLKARAQSKSTNIDGVNSEKTQATLSKFFRSSSPSIGSRNTSIAEENDLSVHVGTKRSRETDHMSPDSRSAKK
SCPPSNTDNATKDLGSTSGTSSTKDDIQSDTGTDRKLSEKTTRKLLQYQSNANSELEVKECKHIPLSHLIKARQGDDRED
KHMCLGVDNNGKDADSDCEIIDDISKPSASSSSTPTLRKFTNSKSKLEALNKRTKTKYTPLEQQYVEIKGKHPGAVLLIE
CGYKYRFFGEDAEIAAKVLKIFCHLDHNFQTASIPVHRLFVHVRRLVAAGYKVGVVKQTETAALKAAGENRSAPFKRQLT
AMYTKSTLIGEDIESCSEEVEVSMDTSNVNCTLLCVYDLPMQAKDKEQTIGILAVKPSTGNVVYDSFVDTELRTELDTRI
THTQPVEMIIPKTLTEKTQKFIDDTVKYSSTDDDKIRVEHLDDRVFEYSEAFQTVSEFYSSDTDQYQLQSVINLPHSVIC
CLSAMITYLKQFNLDRILQMNRSKEGKGHEELVNKLQYTVQQLQEKIKAQEMALMDANRKGESSSREKYLSDTTLNQVRA
VLTDVEKKRGRPFFDSDPVDRQVPGMLVHTLERCVQEFTTDNNQKKCKIEELEGEIKSLKQNLSQDKETLFKEQQDKITN
MAHEHERQMLTMQEKANNSRKQATQLQQQLALIDSTDDDKIRVEHLDDRVFEYSEAFQTVSEFYSSDTAFEFKFSLLLSA
LSKFTTESTYLKLPGKTTRNLELFQNQTNLQERGSLFWVLNHTVTKYGNRMLRTWLSCPLLDVTKIKQRQEAVEELSFEA
KKGTWGRLQGALSRTPDLEKGLCSIFYNKCSIQEFYSVVKSLSVLHTEFKVLSQSIDSVKSEVLKTIICEVEDLINGIDN
YSDMLHEDSVRENDKTNIFKDESIFPSVLKRKSAIQDVMKDLQEHRREVRLLLKQPALDYTTVMGTEYLIEVKNAIIKVV
PQDWTKISSVLRLISQGSRSSSQDYIPQAKYGLPRL

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