Gene
Gene Model ID | pfu_aug2.0_1314.1_14958 |
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Locus | scaffold1314.1 : 106316 ... 127640 : + |
To GenomeBrowser | scaffold1314.1:106316..127640 |
Genes list of scaffold | scaffold1314.1 |
Synonym | pfu_aug1.0_3816.1_01542 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
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dna mismatch repair protein msh3 | GO:0000228 GO:0000403 GO:0000404 GO:0000406 GO:0000710 GO:0003697 GO:0005654 GO:0007131 GO:0008094 GO:0016020 GO:0016447 GO:0019899 GO:0032137 GO:0032142 GO:0032181 GO:0032302 GO:0032357 GO:0042803 GO:0043570 GO:0045910 GO:0051096 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_1314.1_14958.t1 | 1 | 1 | MutS_I | 219 | 330 | 8.9e-30 | 103.0 | 4.6e-33 | 2.3e-29 | 101.7 |
pfu_aug2.0_1314.1_14958.t1 | 2 | 1 | MutS_II | 353 | 495 | 2.3e-16 | 60.1 | 4.6e-20 | 2.3e-16 | 60.1 |
pfu_aug2.0_1314.1_14958.t1 | 3 | 1 | MutS_III | 412 | 457 | 4.3e-30 | 105.0 | 0.6 | 3000.0 | -2.3 |
pfu_aug2.0_1314.1_14958.t1 | 3 | 2 | MutS_III | 493 | 700 | 4.3e-30 | 105.0 | 0.5 | 2500.0 | -2.0 |
pfu_aug2.0_1314.1_14958.t1 | 2 | 2 | MutS_II | 672 | 723 | 2.3e-16 | 60.1 | 0.17 | 820.0 | 0.0 |
pfu_aug2.0_1314.1_14958.t1 | 3 | 3 | MutS_III | 736 | 928 | 4.3e-30 | 105.0 | 8.7e-34 | 4.3e-30 | 105.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_1314.1_14958.t1 | gi|114599394|ref|XP_001134751.1| | PREDICTED: DNA mismatch repair protein Msh3 [Pan troglodytes] | 0.0 |
pfu_aug2.0_1314.1_14958.t1 | gi|40225466|gb|AAH11817.1| | MSH3 protein, partial [Homo sapiens] | 0.0 |
pfu_aug2.0_1314.1_14958.t1 | gi|602723821|ref|XP_007472047.1| | PREDICTED: DNA mismatch repair protein Msh3-like, partial [Lipotes vexillifer] | 0.0 |
pfu_aug2.0_1314.1_14958.t1 | gi|694910554|ref|XP_009447204.1| | PREDICTED: DNA mismatch repair protein Msh3 [Pan troglodytes] | 0.0 |
pfu_aug2.0_1314.1_14958.t1 | gi|544438029|ref|XP_005557341.1| | PREDICTED: DNA mismatch repair protein Msh3 isoform X2 [Macaca fascicularis] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_1314.1_14958.t1 |
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Definition | - |
>pfu_aug2.0_1314.1_14958.t1 atgaaaggtgttaatttaacaaaactgaaagcccgtgcccaatcgaaaagtacaaatattgacggagtaaattcggaaaa gacacaggctactctttctaagttctttcgttccagcagtccgtccattggcagccgaaatacgtcaattgctgaggaga atgatttatcagtacatgttggcaccaaaaggtctagagaaactgatcatatgagtccagattctagatcagctaagaaa tcatgtcctccctccaatacagataatgcaacaaaagatttaggcagcaccagtggaacatctagtacgaaagatgacat tcaaagtgatactgggactgacagaaagttgtctgagaaaacaactaggaaacttctacaataccagtccaatgcaaatt ctgaactggaggtaaaagagtgcaaacacatccctttaagccatttaattaaggcaaggcaaggagatgatagggaggat aaacatatgtgcttgggtgtagataacaatggaaaagatgccgactccgattgtgaaattatagatgacatcagtaaacc ttctgcatcatcatcatccactccaacactgagaaaatttactaacagtaaaagtaaattggaagcactgaacaagagga ctaaaactaaatacacacctctggaacagcagtatgtggaaatcaaaggaaaacatccaggtgcagttttattgattgag tgtggttataagtatagattcttcggtgaagacgcagagattgcagctaaagtcctgaaaatattttgccatctggatca caatttccagacagcgagcattcctgtacatagactgtttgtccatgttaggagacttgtagctgcgggttacaaggtag gagttgtaaaacagacggaaacagcagctctgaaagcagctggggaaaataggagtgctccattcaaacgacaactcacc gctatgtatacaaagtctactctgattggagaagatattgagagttgttcagaggaagtggaagtttccatggataccag taatgtaaactgtaccctgttatgtgtgtatgacttacccatgcaagcaaaggacaaggaacaaacaataggaattctgg cagtgaagccgtccactggtaatgtcgtctatgatagttttgttgacacagagctacgtacagaattagataccagaata acacacactcaacctgtggagatgattatacctaaaaccctcacagagaagacgcagaagtttatagacgacactgttaa atatagttcaactgatgatgacaaaattcgagtggaacaccttgatgacagagtctttgagtattctgaagcctttcaga cagtgtctgaattttactcctctgacaccgatcagtaccaactacaaagtgtcatcaacctacctcattctgtgatatgt tgtttatctgctatgataacgtacctcaagcagtttaatctggatagaatacttcagatgaataggagtaaggaaggaaa gggtcacgaggagctggttaacaagttacaatacacagtacaacaattacaggaaaaaatcaaagctcaggaaatggcac tcatggatgccaacagaaagggggagagtagtagtagagagaagtatctgtccgacacgacccttaaccaggtacgagct gtgctgacagatgtcgagaagaagcgagggcggccattttttgactcagacccggtggatcggcaggtacctggtatgct ggtccacacactggagagatgtgtacaggaattcactacggataataaccaaaaaaagtgtaaaatagaagagcttgaag gtgaaatcaagtcgctgaagcagaatctgagtcaagataaagagactttattcaaagaacagcaagataagattactaac atggcccacgaacacgagagacaaatgttgacgatgcaagaaaaggccaataactctaggaagcaagctacgcaattaca acaacaacttgcattaatagattcaactgatgatgacaaaattcgagtggaacatcttgatgacagagtctttgagtatt ctgaagcctttcagacagtgtctgaattttactcctctgacactgcatttgagttcaaattttccctcttgttgagtgcc ttatcaaaatttaccactgaatctacttacctaaaattaccaggtaaaacaaccaggaaccttgaactattccagaacca aacaaacttacaagagaggggctcattattctgggtcctcaatcatactgttaccaaatatggaaaccgcatgcttagga catggttgtcctgccctcttcttgatgtcacgaaaataaaacaacgtcaagaagcagtggaggaactgtcttttgaggca aagaaagggacatggggacgattacaaggtgctttatcaagaactccagacttggagaaaggtctctgctcaattttcta taacaagtgcagtatccaggagttttattctgtggtaaagtccctctcagtacttcatactgagttcaaggttctgtcac agtctatagacagtgtgaaatcagaagttttgaaaaccattatttgtgaagttgaagatcttataaatggtatcgacaat tacagtgatatgcttcatgaagacagtgtaagagaaaatgacaaaacaaatatattcaaagatgaaagcatctttccatc agttttgaagagaaaatctgccattcaagatgtaatgaaggacttacaggaacataggagagaagttagattgttattaa agcagcctgcccttgactatacaactgtcatgggaactgaatatcttattgaggtcaaaaatgccataataaaagtggta ccccaagactggacaaaaataagcagcgtattgagactcatcagccaagggtcaaggtcgagtagtcaagattatattcc acaggcaaaatatggactaccaagactgtga |
Protein
Protein ID | pfu_aug2.0_1314.1_14958.t1 |
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Definition | - |
>pfu_aug2.0_1314.1_14958.t1 MKGVNLTKLKARAQSKSTNIDGVNSEKTQATLSKFFRSSSPSIGSRNTSIAEENDLSVHVGTKRSRETDHMSPDSRSAKK SCPPSNTDNATKDLGSTSGTSSTKDDIQSDTGTDRKLSEKTTRKLLQYQSNANSELEVKECKHIPLSHLIKARQGDDRED KHMCLGVDNNGKDADSDCEIIDDISKPSASSSSTPTLRKFTNSKSKLEALNKRTKTKYTPLEQQYVEIKGKHPGAVLLIE CGYKYRFFGEDAEIAAKVLKIFCHLDHNFQTASIPVHRLFVHVRRLVAAGYKVGVVKQTETAALKAAGENRSAPFKRQLT AMYTKSTLIGEDIESCSEEVEVSMDTSNVNCTLLCVYDLPMQAKDKEQTIGILAVKPSTGNVVYDSFVDTELRTELDTRI THTQPVEMIIPKTLTEKTQKFIDDTVKYSSTDDDKIRVEHLDDRVFEYSEAFQTVSEFYSSDTDQYQLQSVINLPHSVIC CLSAMITYLKQFNLDRILQMNRSKEGKGHEELVNKLQYTVQQLQEKIKAQEMALMDANRKGESSSREKYLSDTTLNQVRA VLTDVEKKRGRPFFDSDPVDRQVPGMLVHTLERCVQEFTTDNNQKKCKIEELEGEIKSLKQNLSQDKETLFKEQQDKITN MAHEHERQMLTMQEKANNSRKQATQLQQQLALIDSTDDDKIRVEHLDDRVFEYSEAFQTVSEFYSSDTAFEFKFSLLLSA LSKFTTESTYLKLPGKTTRNLELFQNQTNLQERGSLFWVLNHTVTKYGNRMLRTWLSCPLLDVTKIKQRQEAVEELSFEA KKGTWGRLQGALSRTPDLEKGLCSIFYNKCSIQEFYSVVKSLSVLHTEFKVLSQSIDSVKSEVLKTIICEVEDLINGIDN YSDMLHEDSVRENDKTNIFKDESIFPSVLKRKSAIQDVMKDLQEHRREVRLLLKQPALDYTTVMGTEYLIEVKNAIIKVV PQDWTKISSVLRLISQGSRSSSQDYIPQAKYGLPRL |