Gene
| Gene Model ID | pfu_aug2.0_1314.1_14959 |
|---|---|
| Locus | scaffold1314.1 : 127696 ... 133519 : + |
| To GenomeBrowser | scaffold1314.1:127696..133519 |
| Genes list of scaffold | scaffold1314.1 |
| Synonym | pfu_aug1.0_40220.1_41162 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1314.1_14959.t1 | 2 | 1 | MutS_V | 52 | 78 | 3.4e-19 | 69.1 | 0.00011 | 0.81 | 9.0 |
| pfu_aug2.0_1314.1_14959.t1 | 2 | 2 | MutS_V | 79 | 167 | 3.4e-19 | 69.1 | 6.1e-20 | 4.5e-16 | 58.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1314.1_14959.t1 | gi|736159059|ref|XP_010781548.1| | PREDICTED: DNA mismatch repair protein Msh3-like [Notothenia coriiceps] | 1.00053e-42 |
| pfu_aug2.0_1314.1_14959.t1 | gi|705692719|ref|XP_010122882.1| | PREDICTED: DNA mismatch repair protein Msh3, partial [Chlamydotis macqueenii] | 5.0e-27 |
| pfu_aug2.0_1314.1_14959.t1 | gi|723122611|ref|XP_010288536.1| | PREDICTED: DNA mismatch repair protein Msh3-like, partial [Phaethon lepturus] | 2.0e-26 |
| pfu_aug2.0_1314.1_14959.t1 | gi|706142925|ref|XP_010203957.1| | PREDICTED: DNA mismatch repair protein Msh3-like, partial [Colius striatus] | 2.0e-26 |
| pfu_aug2.0_1314.1_14959.t1 | gi|704519679|ref|XP_010082822.1| | PREDICTED: DNA mismatch repair protein Msh3-like, partial [Pterocles gutturalis] | 2.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_1314.1_14959.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1314.1_14959.t1 atgagggaacagttagttattgactgtaacgaagcttggaatcagttcacaaagtcattcagtgataattatgtgaagta caagaaggctgtgaatcatcttgctacattagactgtttactttctttggccacagttgccaggagtcaaggctattgca ggccggcatttgtgacagatagagtttgtatacagatagagaaaggtcagcatcctgtcattacacagctgttagagctg cgatgtcccaccttgtttgtgactcactatcccatgttagcagagtttgagaagcttcatccagcagtagctgtcaacta tcatatgtcattcttcctggaggatgaagatgatcaggcaggggacaggttgttgactttcttatatcagctggtttctg ggtcagcggccagaagttatggtctgaatgtagcacgtctagcgggaattcctagtgaagtgattcataaagccacagag atgtcacatgatcttgaaacagaaataagaaccaagaggaaacaacttgaagagtttgggcattacttcagtgtgaaaga ctcaagtaggttaataagtgcattatccaagacacctagtacctcttga |
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Protein
| Protein ID | pfu_aug2.0_1314.1_14959.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1314.1_14959.t1 MREQLVIDCNEAWNQFTKSFSDNYVKYKKAVNHLATLDCLLSLATVARSQGYCRPAFVTDRVCIQIEKGQHPVITQLLEL RCPTLFVTHYPMLAEFEKLHPAVAVNYHMSFFLEDEDDQAGDRLLTFLYQLVSGSAARSYGLNVARLAGIPSEVIHKATE MSHDLETEIRTKRKQLEEFGHYFSVKDSSRLISALSKTPSTS |
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