Gene
| Gene Model ID | pfu_aug2.0_1321.1_04963 |
|---|---|
| Locus | scaffold1321.1 : 74190 ... 93035 : - |
| To GenomeBrowser | scaffold1321.1:74190..93035 |
| Genes list of scaffold | scaffold1321.1 |
| Synonym | pfu_aug1.0_131421.1_71771 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| eukaryotic initiation factor 4a-iii | GO:0003676 GO:0004386 GO:0005524 GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1321.1_04963.t1 | 2 | 1 | DEAD | 3 | 93 | 4.0e-18 | 65.4 | 2.7e-21 | 1.0e-17 | 64.1 |
| pfu_aug2.0_1321.1_04963.t1 | 1 | 1 | Helicase_C | 164 | 240 | 1.7e-27 | 95.1 | 1.0e-30 | 3.7e-27 | 93.9 |
| pfu_aug2.0_1321.1_04963.t1 | 2 | 2 | DEAD | 168 | 201 | 4.0e-18 | 65.4 | 0.61 | 2300.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1321.1_04963.t1 | gi|676435894|ref|XP_009047705.1| | hypothetical protein LOTGIDRAFT_225283 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1321.1_04963.t1 | gi|241737496|ref|XP_002414033.1| | DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_1321.1_04963.t1 | gi|260790063|ref|XP_002590063.1| | hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1321.1_04963.t1 | gi|390344939|ref|XP_785431.3| | PREDICTED: eukaryotic initiation factor 4A-III [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_1321.1_04963.t1 | gi|723564780|ref|XP_010303191.1| | PREDICTED: eukaryotic initiation factor 4A-III, partial [Balearica regulorum gibbericeps] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1321.1_04963.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1321.1_04963.t1 atgaacgttcagtgtcatgcctgtattggaggtacaaatgtcggtgaagatatccgtaaacttgactatggtcagcatgt agtatcgggcactccaggaagggtttttgacatgattagaagacgtaacttgagaacaaggtcgatcaaaatgctggtgt tagatgaagcagatgaaatgttgaataagggttttaaggagcaaatctatgatgtatacaggtaccttcctccagcgacc caggtagttctgatctctgccacactaccacatgaaatcctggaaatgaccagtaaattcatgacagaccctatcagaat cctagtcaaacgtgatgagttgactttggagggaatcaagcagttctttgtggcagtggagagagaggaatggaagtttg acactttgtgtgatctatacgatacactcactataacacaagccgtcatattctgtaatacaaaacggaaggtcgactgg ttaacagagaaaatgagggaagctaacttcacagtttcctcaatgcatggtgatatggtacagaaagaaagggacgcaat tatgaaggaattcagatctggagcgagccgtgtattgatcactacagatgtttgggctaggggtatagatgtccagcagg tgtccctcgtcatcaactatgatttacccaacaacagagaattgtacatacacagaattggtcgatcaggtagatttggt cgtaagggtgttgcaatcaactttgtaaagaacgatgatatcagaatcctccgagatattgagcagtactactccacaca aatagatgaaatgcccatgaatgttgctgacttgatctga |
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Protein
| Protein ID | pfu_aug2.0_1321.1_04963.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1321.1_04963.t1 MNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT QVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW LTEKMREANFTVSSMHGDMVQKERDAIMKEFRSGASRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG RKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI |
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