Gene
| Gene Model ID | pfu_aug2.0_1326.1_21545 |
|---|---|
| Locus | scaffold1326.1 : 79936 ... 94808 : + |
| To GenomeBrowser | scaffold1326.1:79936..94808 |
| Genes list of scaffold | scaffold1326.1 |
| Synonym | pfu_aug1.0_6114.1_59940 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trna-dihydrouridine synthase | GO:0008033 GO:0016491 GO:0043167 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1326.1_21545.t1 | 3 | 1 | zf-CCCH | 146 | 162 | 4.8e-06 | 26.1 | 1.2e-07 | 0.00057 | 19.4 |
| pfu_aug2.0_1326.1_21545.t1 | 3 | 2 | zf-CCCH | 181 | 195 | 4.8e-06 | 26.1 | 1.3e-05 | 0.062 | 12.9 |
| pfu_aug2.0_1326.1_21545.t1 | 2 | 1 | Dus | 233 | 288 | 0.0 | 202.5 | 0.089 | 440.0 | -0.6 |
| pfu_aug2.0_1326.1_21545.t1 | 2 | 2 | Dus | 350 | 610 | 0.0 | 202.5 | 0.0 | 0.0 | 200.0 |
| pfu_aug2.0_1326.1_21545.t1 | 3 | 3 | zf-CCCH | 361 | 368 | 4.8e-06 | 26.1 | 1.2 | 6100.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1326.1_21545.t1 | gi|585710815|ref|XP_006824619.1| | PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1326.1_21545.t1 | gi|558181338|ref|XP_006127341.1| | PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Pelodiscus sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1326.1_21545.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1326.1_21545.t1 atgcatgctatactcattggtaattctattttcacatatttatctcgagtcgacaagaagcaagtggcaaattaccaact gaaaacaatgtctacagaaggagcagaaacaagcaagtctgtgaatggaaatggtatagacaatcaaggagataaaacca cagttcaacagaatgtaaagggagccactgttaggcctggggaggccaggataaagaaagaatacctaaaggttgactac aaaccacagctgatggaagaatttgtatcgaaagatgtcaaggaaaaactagacgaagccaaatctgaaaaacgtaaagc tgatgaagaggaccaaggtcaaggtaaaccatctaaaagggtcaaggtcaagggcagaaacaagaaaagacctgtaaacc aaataaaccacaaggccaaactttgcccttccatttttcaagagaaaatttgcaactttggagacaaatgtaaatttagc catgatgtagaggaattcgttaagaataagccaccagacctaggagacgtatgcctcatctttgagacttacggaaaatg tccgtatggcatagcgtgtagatttggcgtcaagcacattgacgaaaataacaaaaatattgtgaacgaggaactttttg caaaaacgagtaaagagaaaaaagtttccaatacgttgcctaaggagctacaggttttgctgtggaagaaacgctataat tttgataaggcgaacgagatcgtaaaagtcatccaggataaggtgaagcagaaattgaacactttcagcaataagtgtgc tggcagacaggtctccaaagagcagaaaggaattgtcaacgctgaatctcagaaagaaatgtcatcagtcagtgagagtg tgccaaaaccagaaggagctactgaatcaagtattcacagtacagaaggaggcgttgctataaaaggaaaagaccaaatc aggataggaggcggagtcactgatgaggaagtcattaagctccgcccacaagaaaagaaaaaaattgagttcgctggaaa aagttatctagcaccccttactacggttggtaatttaccgtttcgtcgtgtctgtaaggagtttggggtagatattacat gtagtgagatggccatggctacaaacatcctgaatggccagatgtctgagtgggcacttatgaaaagacacgtgtcagag gacttgtttggtgtacagatctgtggagggtggccggactccctgtcaagatgtgctcagctcatcaacgagaaagtaga gatggattttgtggatttgaattgtggatgtccgatagatcttgtctataagaggggagagggtagtgccctgccgggga agctgaataagtttgagcagattatacgagggatgaagtccgtacttgacgtaccgctgaccgtcaaaatgaggaccgga atatttcaggacaaaaatatcgcacataccgtcatacctaaactgagagactggggtgctgccatggttacgcttcatgg tagatctagggaacagcgttacactcgcctggctgactgggaatatatcaaccaatgtgccgaggcagcagatcctatgc cgttatttggcaatggtgacatactatcctatgaagatcttgacttccatctgaggcagacaaaggtcaaaggtgtcatg gttgctagaggtgcgttgatcaagccgtggatattcacggagatgaaggagcgtcgtcactgggatatttccgcctcgga gagatatgacatgcttaaaagatacacctcctacggcctggagcactgggggtctgatcaccagggtgtggagacaacta gaagatttctgatggagtggctgtcatttctgtataggtacataccagtgggtctactggagcaggtgccccagaaaatc aacgaaagaccgccatattatgtaggtcgtaatgacctagaaacattgatggctagtcctagctgcttagactggatcaa actcagaaaaggtgcccaagttttgaacaatggtttagtgagatgttactag |
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Protein
| Protein ID | pfu_aug2.0_1326.1_21545.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1326.1_21545.t1 MHAILIGNSIFTYLSRVDKKQVANYQLKTMSTEGAETSKSVNGNGIDNQGDKTTVQQNVKGATVRPGEARIKKEYLKVDY KPQLMEEFVSKDVKEKLDEAKSEKRKADEEDQGQGKPSKRVKVKGRNKKRPVNQINHKAKLCPSIFQEKICNFGDKCKFS HDVEEFVKNKPPDLGDVCLIFETYGKCPYGIACRFGVKHIDENNKNIVNEELFAKTSKEKKVSNTLPKELQVLLWKKRYN FDKANEIVKVIQDKVKQKLNTFSNKCAGRQVSKEQKGIVNAESQKEMSSVSESVPKPEGATESSIHSTEGGVAIKGKDQI RIGGGVTDEEVIKLRPQEKKKIEFAGKSYLAPLTTVGNLPFRRVCKEFGVDITCSEMAMATNILNGQMSEWALMKRHVSE DLFGVQICGGWPDSLSRCAQLINEKVEMDFVDLNCGCPIDLVYKRGEGSALPGKLNKFEQIIRGMKSVLDVPLTVKMRTG IFQDKNIAHTVIPKLRDWGAAMVTLHGRSREQRYTRLADWEYINQCAEAADPMPLFGNGDILSYEDLDFHLRQTKVKGVM VARGALIKPWIFTEMKERRHWDISASERYDMLKRYTSYGLEHWGSDHQGVETTRRFLMEWLSFLYRYIPVGLLEQVPQKI NERPPYYVGRNDLETLMASPSCLDWIKLRKGAQVLNNGLVRCY |
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