Gene
| Gene Model ID | pfu_aug2.0_1326.1_21547 |
|---|---|
| Locus | scaffold1326.1 : 106756 ... 116210 : + |
| To GenomeBrowser | scaffold1326.1:106756..116210 |
| Genes list of scaffold | scaffold1326.1 |
| Synonym | pfu_aug1.0_6114.1_59938 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1326.1_21547.t1 | 3 | 1 | SF3b1 | 198 | 254 | 3.60001e-40 | 137.3 | 4.6e-05 | 0.69 | 9.9 |
| pfu_aug2.0_1326.1_21547.t1 | 3 | 2 | SF3b1 | 255 | 312 | 3.60001e-40 | 137.3 | 4.6e-05 | 0.68 | 9.9 |
| pfu_aug2.0_1326.1_21547.t1 | 3 | 3 | SF3b1 | 322 | 484 | 3.60001e-40 | 137.3 | 5.19999e-40 | 7.7e-36 | 123.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1326.1_21547.t1 | gi|524900062|ref|XP_005106456.1| | PREDICTED: splicing factor 3B subunit 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1326.1_21547.t1 | gi|340712061|ref|XP_003394583.1| | PREDICTED: splicing factor 3B subunit 1 [Bombus terrestris] | 0.0 |
| pfu_aug2.0_1326.1_21547.t1 | gi|383857066|ref|XP_003704027.1| | PREDICTED: splicing factor 3B subunit 1 isoform X1 [Megachile rotundata] | 0.0 |
| pfu_aug2.0_1326.1_21547.t1 | gi|345489666|ref|XP_001599854.2| | PREDICTED: splicing factor 3B subunit 1-like isoform X1 [Nasonia vitripennis] | 0.0 |
| pfu_aug2.0_1326.1_21547.t1 | gi|156542977|ref|XP_001602756.1| | PREDICTED: splicing factor 3B subunit 1-like isoform X1 [Nasonia vitripennis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1326.1_21547.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1326.1_21547.t1 atgctaaaattagcctgtgaaattgaagagcaagtaagacagctgcagaataaaaagaaatctatcggtgcctcaagcgt cacagaggaagatgagcctagacgagtcggactgggttccgagggtcactttgacacagatatttatagctcggggaaac ccaaattctttggttacgtcacatccatagcagcaacagatgaaaaagatgacgatgatgaagtcactgaacattacccc aaaaaatcaaactacacagccccgcttaatttcctcaacgacacacttaatgacaaggactacgatcccatggccgaaca cagaccccagaggatctcggaaaaacaaggggaatacaaagaaaggatgagaaacaggatcatctcccctgaaagatacg atccctttgccgaaggcgggaagactccagatgtcggggctaggacttttgcaaaggtcatgacaagccagtatctagac agagaaaaaaaactactgcagaatcagatggtagaaaaagctaaagctggagaactacactcagtaaacggttcatcagg ggatgcctccgcacaaaaagccgccagtttgcaggagaagaaaaaacggcgctgggatcaagcctcagacgacacaccag ctaaaaaatccaaaacctgggagaatgcagaaactccgtcaaatacacggtgggatgaaactcctggtagacctaaaggt tctgagaccccaggggcaacgccgggacagagtaccaggatgtgggatgccacgcccggacatgccaccccaggggcagt aacttctggtagggatacgcctggacatcagggaacaccaagtgctaggaggaacagatgggacgagacaccgagaactg agagagaaactcctggacatggcagtggatgggcagagacaccgaagactgacaggggtggggatctaatacaagacacg cctactcccagtgctagtaaaaggagatcgcgatgggacgagacccccggggcacaaaccccaggatctatgacccctag tgccatgactccaagtatgacccctgggaatcagacccctggagggtcaacacccagtggctttactcctggaggctcca caccttcaggttttaccccgggaggaatcacacctagcggtacaacccctgtaggtgctaaggctatggccatggcgaca cccactcctggtcacctgttgtcaatgaccccagaacagatgcaggcctacacgtggcagagagagattgacgagagaaa cgctcctatgtccgatgatgatctggacgctttgtttcctccaggatataaggttctacaacccccagcaggttatgtac ccatccgtaccccggcccgtaagctgattgccacgcccacaccgatggcaggcacgccccagggctttaggatgcagacc ccggacagtaagacgcagattgtagacatgcagcccaaagggaacttacccatgatgaagccagacgacatgcagtactt tgataagctactggttgatgtagatgaggagagtctgtcacctgaggaacaaaaagaaagaaaaatcatgaagctcctcc tcaaaattaagaacggcacacctcctatgagaaagggaaacttgaattgtacgaaaacacagcaaactcaagtaatcaag tacatacgggtatacatttgtacatgctgctttaagacaaatcacagacaaagcgcgggagtttggagcgggtccattat tcaaccagatccttcccctcttgatgtctccgacactcgaagatcaggagcgccatctgttggtgaaagtcattga |
|
Protein
| Protein ID | pfu_aug2.0_1326.1_21547.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1326.1_21547.t1 MLKLACEIEEQVRQLQNKKKSIGASSVTEEDEPRRVGLGSEGHFDTDIYSSGKPKFFGYVTSIAATDEKDDDDEVTEHYP KKSNYTAPLNFLNDTLNDKDYDPMAEHRPQRISEKQGEYKERMRNRIISPERYDPFAEGGKTPDVGARTFAKVMTSQYLD REKKLLQNQMVEKAKAGELHSVNGSSGDASAQKAASLQEKKKRRWDQASDDTPAKKSKTWENAETPSNTRWDETPGRPKG SETPGATPGQSTRMWDATPGHATPGAVTSGRDTPGHQGTPSARRNRWDETPRTERETPGHGSGWAETPKTDRGGDLIQDT PTPSASKRRSRWDETPGAQTPGSMTPSAMTPSMTPGNQTPGGSTPSGFTPGGSTPSGFTPGGITPSGTTPVGAKAMAMAT PTPGHLLSMTPEQMQAYTWQREIDERNAPMSDDDLDALFPPGYKVLQPPAGYVPIRTPARKLIATPTPMAGTPQGFRMQT PDSKTQIVDMQPKGNLPMMKPDDMQYFDKLLVDVDEESLSPEEQKERKIMKLLLKIKNGTPPMRKGNLNCTKTQQTQVIK YIRVYICTCCFKTNHRQSAGVWSGSIIQPDPSPLDVSDTRRSGAPSVGESH |
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