Gene
| Gene Model ID | pfu_aug2.0_1326.1_21549 |
|---|---|
| Locus | scaffold1326.1 : 121666 ... 123809 : + |
| To GenomeBrowser | scaffold1326.1:121666..123809 |
| Genes list of scaffold | scaffold1326.1 |
| Synonym | pfu_aug1.0_6114.1_59938 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1326.1_21549.t1 | 2 | 1 | HEAT_2 | 10 | 77 | 5.5e-07 | 29.7 | 8.5e-05 | 0.21 | 11.8 |
| pfu_aug2.0_1326.1_21549.t1 | 2 | 2 | HEAT_2 | 48 | 137 | 5.5e-07 | 29.7 | 3.4e-08 | 8.3e-05 | 22.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1326.1_21549.t1 | gi|584044669|ref|XP_006767180.1| | PREDICTED: splicing factor 3B subunit 1-like, partial [Myotis davidii] | 0.0 |
| pfu_aug2.0_1326.1_21549.t1 | gi|115444193|ref|NP_001045876.1| | Os02g0146400, partial [Oryza sativa Japonica Group] | 0.0 |
| pfu_aug2.0_1326.1_21549.t1 | gi|658053279|ref|XP_008362386.1| | PREDICTED: splicing factor 3B subunit 1-like [Malus domestica] | 0.0 |
| pfu_aug2.0_1326.1_21549.t1 | gi|698446983|ref|XP_009700075.1| | PREDICTED: splicing factor 3B subunit 1, partial [Cariama cristata] | 0.0 |
| pfu_aug2.0_1326.1_21549.t1 | gi|625236684|ref|XP_007609541.1| | PREDICTED: splicing factor 3B subunit 1 isoform X4 [Cricetulus griseus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1326.1_21549.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1326.1_21549.t1 atgggacatttgggcgtggtcctgtacgaatacctgggagaggaataccctgaggtgttgggcagtatcctgggggctct caaggggatcgtaaacgtcattggaatgaccaagatgaccccgcccatcaaagatctcctacccagactcacacctatcc tcaaaaacagacatgagaaagtccaggagaactgtatagacttggtgggaaggatcgcagatcgtggagcagagtacgtg tcggcaagggaatggatgagaatctgctttgagctgttagaactactcaaagctcacaaaaaagccatcagaagggccac tgtcaatacgtttggttatattgctaaggctattggtcctcacgacgtgttagcaactctcctcaataatctcaaagtac aggaaagacagaatcgtgtgtgtacaacagtcgccatagcaatcgtagcagagacatgttcacctttcacagtgttacca gctttaatgaacgagtatagagtgccagaacttaacgttcagaatggagttctcaagtcgttgtcgtttatgttcgagta tatcggagaaatgggaaaagattatatttattctgtagctccacttttagaagatgctctcatggacaggtag |
|
Protein
| Protein ID | pfu_aug2.0_1326.1_21549.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1326.1_21549.t1 MGHLGVVLYEYLGEEYPEVLGSILGALKGIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYV SAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP ALMNEYRVPELNVQNGVLKSLSFMFEYIGEMGKDYIYSVAPLLEDALMDR |
|