Gene
| Gene Model ID | pfu_aug2.0_1327.1_24858 |
|---|---|
| Locus | scaffold1327.1 : 236 ... 15963 : + |
| To GenomeBrowser | scaffold1327.1:236..15963 |
| Genes list of scaffold | scaffold1327.1 |
| Synonym | pfu_aug1.0_2189.1_51558 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| succinate dehydrogenase | GO:0005743 GO:0006099 GO:0006105 GO:0006810 GO:0008177 GO:0022904 GO:0050660 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1327.1_24858.t1 | 1 | 1 | FAD_binding_2 | 125 | 277 | 4.2039e-45 | 154.4 | 0.0 | 5.60519e-45 | 153.8 |
| pfu_aug2.0_1327.1_24858.t1 | 1 | 1 | Succ_DH_flav_C | 332 | 484 | 6.44597e-44 | 148.9 | 0.0 | 1.09301e-43 | 148.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1327.1_24858.t1 | gi|524896640|ref|XP_005104792.1| | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1327.1_24858.t1 | gi|288856295|ref|NP_001165801.1| | succinate dehydrogenase complex, subunit A, flavoprotein (Fp) [Nasonia vitripennis] | 0.0 |
| pfu_aug2.0_1327.1_24858.t1 | gi|410904991|ref|XP_003965975.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1327.1_24858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1327.1_24858.t1 atgacgtttattttggccttgacggtagcagcatggacatctttacctcaaacaacaacttcaagcaccgtcacctccac gacaacatctacaacgacgacgacacccacaacaacaataccaactacaacaacgacaacaacagcaacttcatcatcta caacaacaacacagacaggagtggcacctaccaagccatggtggtgggtggagtacgacgcagatggtttggcaattggt cagaacggattgtccttcaaagagtccagacccgaagtgaagtcagggataattggtttagctattggattcgctacttt ctttatcgtcaccattacaatatgcgtgtgctggctacgctgctcaggtatctatggagccgggtgtcttatcacagagg gatcccgaggggagggaggctacctaataaactccgagggggagagatacatggaacgttatgcccccacagccaaggat ctggcttctagagatgtggtgtccagggctagtacaatagagatcagggaaggaagaggagtgggtccggataaggatca tgtttacctacagctttcccatctcccccctgaggtgttacacagccgattgccaggaatctccgagacggcgatgattt ttgcgggagttgatgtcactaaagatcccatccctgtactccctactgtacactacaacatgggaggggtaccaactaac tacaaaggacagcagaatggtcaggacaaggttataccaggtctgtacgcctgcggtgaagccgcctgcgcctcagtaca cggtgctaacaggctcggagctaactcactactagatcttgttgtgtttggtcgagcttgtgctaatactataatacagg aaaacaaacctggagagaagattggaagcattaaacagaatgctggagaagagtctgtggctaacattgacaaactgcga catgctaacggtgatattcctacagcagatctcagactctccatgcagaaagctatgcagacccatgcagcagtgttcag agacggtcctggaatgaaggagggagtacagaaactagaaagtctttataaagacatggaaaacgtcaaggtatctgaca ggggaatggtgtggaacacagatttaatagaaacattagagttacagaaccttatgatcaactcagtacaaactatagta tcagctgaagctaggaaggaaagtagaggtgctcatcacagggaagacttccaaaaaagattagatgaatacgattatag taaaccactagagggacaacagaaaaaagatattaaagatcactggaggaaacactcattatcatttgttgatactgatt caggaaagactacaatggaatatcgacctgtaattgactctacattagatcctgatgcatgtgagcaaatccctcctgcc atcagatcatactaa |
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Protein
| Protein ID | pfu_aug2.0_1327.1_24858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1327.1_24858.t1 MTFILALTVAAWTSLPQTTTSSTVTSTTTSTTTTTPTTTIPTTTTTTTATSSSTTTTQTGVAPTKPWWWVEYDADGLAIG QNGLSFKESRPEVKSGIIGLAIGFATFFIVTITICVCWLRCSGIYGAGCLITEGSRGEGGYLINSEGERYMERYAPTAKD LASRDVVSRASTIEIREGRGVGPDKDHVYLQLSHLPPEVLHSRLPGISETAMIFAGVDVTKDPIPVLPTVHYNMGGVPTN YKGQQNGQDKVIPGLYACGEAACASVHGANRLGANSLLDLVVFGRACANTIIQENKPGEKIGSIKQNAGEESVANIDKLR HANGDIPTADLRLSMQKAMQTHAAVFRDGPGMKEGVQKLESLYKDMENVKVSDRGMVWNTDLIETLELQNLMINSVQTIV SAEARKESRGAHHREDFQKRLDEYDYSKPLEGQQKKDIKDHWRKHSLSFVDTDSGKTTMEYRPVIDSTLDPDACEQIPPA IRSY |
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