Gene
| Gene Model ID | pfu_aug2.0_133.1_10320 |
|---|---|
| Locus | scaffold133.1 : 56836 ... 78425 : - |
| To GenomeBrowser | scaffold133.1:56836..78425 |
| Genes list of scaffold | scaffold133.1 |
| Synonym | pfu_aug1.0_5975.1_59907 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| small conductance calcium-activated potassium channel protein 3 | GO:0006813 GO:0015269 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_133.1_10320.t1 | 2 | 1 | RVT_1 | 124 | 225 | 8.4e-07 | 28.5 | 1.5e-09 | 2.8e-06 | 26.8 |
| pfu_aug2.0_133.1_10320.t1 | 2 | 2 | RVT_1 | 271 | 298 | 8.4e-07 | 28.5 | 1.8 | 3400.0 | -2.9 |
| pfu_aug2.0_133.1_10320.t1 | 2 | 1 | SK_channel | 346 | 461 | 1.8e-25 | 89.0 | 9.6e-29 | 1.8e-25 | 89.0 |
| pfu_aug2.0_133.1_10320.t1 | 2 | 1 | Ion_trans_2 | 364 | 382 | 6.3e-13 | 48.2 | 0.75 | 1400.0 | -1.0 |
| pfu_aug2.0_133.1_10320.t1 | 2 | 2 | Ion_trans_2 | 540 | 620 | 6.3e-13 | 48.2 | 3.4e-16 | 6.3e-13 | 48.2 |
| pfu_aug2.0_133.1_10320.t1 | 2 | 2 | SK_channel | 596 | 615 | 1.8e-25 | 89.0 | 2.7 | 5100.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_133.1_10320.t1 | gi|676445832|ref|XP_009050881.1| | hypothetical protein LOTGIDRAFT_94219, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_133.1_10320.t1 | gi|449489820|ref|XP_004174819.1| | PREDICTED: small conductance calcium-activated potassium channel protein 3 [Taeniopygia guttata] | 0.0 |
| pfu_aug2.0_133.1_10320.t1 | gi|554545992|ref|XP_005867563.1| | PREDICTED: small conductance calcium-activated potassium channel protein 3 isoform X3 [Myotis brandtii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_133.1_10320.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10320.t1 atgagatccatgcgtagtctcgtgaccgtggtcgccccgtacaccctgcacacagcgaatatcgcagacgaactacccac cgaactccgttccacaggcagaagccacaattgcagaaaccggataggaaagttcccaggtgaatgcaatatccaaatcg acccagctacacccccagtggtccaccctcctcgtaaggtacccctcgcactccatgatagactttcacaagagctgacc cgcatggaaactgaaggtatcgtaacaaaggtcacagaacatacacagtgggtaaactacctcgttgttatcgagactag tagcggtaaattgagggtatgcctagaccccagggatttgaacaaggcaattcagaggccctattacccaatgagaactt tggaagacacacttcctgaactatctggtgctaaaatattcaccaaacttgaccttcgttgcggatattggaccatacct ttgtctaaggactcctcctatttgaccactttcaatactcccttcgggagatataggtatctaagattaccatttggcct aatatcgtcacaagacgaatttcagagaaaggtcaatgaatgcttcgagggcatccccggagttgtagcacttgtagacg atatacttgtcttcgggaaaaatcaagtagatcatgacctagaccttagaaagaaagctaaagacagtaaaagcgacccc taccttggactcttagaataccgtaatactcctattgacaattctggcaactctcctgcagaattactgcaaggtcgtca attaaggtccatattacccatactgcaatcacagctaccccctaaggtcatggattacagtcatgcaaggagaatgaatg atgtctgtctggaaatggacaaccctaaaacaccactctgtaaatctgaccgcatcaggatgaagtatatggggaataac ccggaaacagatccaaagaaaaacactactggcggcaaaaccggaaacggaaatatgcttccgttgggggcaaaaattaa acgccgcaccagcttggtgaatcgccgtcgatggatagtaaatttagaattcttcttagctatggtgggaattatcatta tgatgatagaaacggaactattcatcaagtataaagtggagaagacatcgatgacgtcattctctctaaagtgcgtcatt tccgctacaacagcgatgcttcttgtgtctatatgtatgtattattacactggagcgcagatcaaagcgatagacaccgg agtcaaggattgggtgtcggtgatatcatcgtggacggttttgtcgatgaccactgaactgttggtatgttcaatccatc ccttccccggggatttgaaaatggagtatgtatcccccatcggtactggtcacaaagtgagcgtggacgctgtgttatcc attgtgatgatgtcacgattgtatttggtcgcaaaattcgccgttgcgcatagtcggctccttacagatacatccaccca tagtataggagcactgagtaaagtgaaaatcaacactttattcgtcttcaaagccgccatgacaaacaaaccgggtcaac tacttctgttcgtgatgattatgacatttctggtcaattgctgggcaatgaggacttgtgaattgtattatgaaaggggc aacatcgaaaagaattcgtaccttgaaattatgtggctgattgcaataacgttccttactgtcgggtatggtgataaaac ccctcggagctactgtgggcgttatatttccatagtaacaggggcaatgggcgtggtcacaacagctcttttggttgcca tcatagcacggcagctagaacaatcaagaccggaacgatacgtattcaattttgtctcaaggatgcaggtcaaatatcga attaaaacggcagcggcgaatgtcatcaaggccaccttaagaatttggattttacgacaatatggtgatgaatttaagcg cgaaattcgaaaatacgacgacaaattaaaacaaggattaaaagaaatcaaaaatgcaaaggaggaaatggaacacatag gggaagacgcggtagggatcgttgacgtcattcatggtgtagagcgaattggtttacagcttgaaaagaaattgaatcga attgactatttggagaaacacgttaccgaccttcaagatcagttccaaaccattgatcaaaaactggaggacattaaggg catgctacttaaacgttaa |
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Protein
| Protein ID | pfu_aug2.0_133.1_10320.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10320.t1 MRSMRSLVTVVAPYTLHTANIADELPTELRSTGRSHNCRNRIGKFPGECNIQIDPATPPVVHPPRKVPLALHDRLSQELT RMETEGIVTKVTEHTQWVNYLVVIETSSGKLRVCLDPRDLNKAIQRPYYPMRTLEDTLPELSGAKIFTKLDLRCGYWTIP LSKDSSYLTTFNTPFGRYRYLRLPFGLISSQDEFQRKVNECFEGIPGVVALVDDILVFGKNQVDHDLDLRKKAKDSKSDP YLGLLEYRNTPIDNSGNSPAELLQGRQLRSILPILQSQLPPKVMDYSHARRMNDVCLEMDNPKTPLCKSDRIRMKYMGNN PETDPKKNTTGGKTGNGNMLPLGAKIKRRTSLVNRRRWIVNLEFFLAMVGIIIMMIETELFIKYKVEKTSMTSFSLKCVI SATTAMLLVSICMYYYTGAQIKAIDTGVKDWVSVISSWTVLSMTTELLVCSIHPFPGDLKMEYVSPIGTGHKVSVDAVLS IVMMSRLYLVAKFAVAHSRLLTDTSTHSIGALSKVKINTLFVFKAAMTNKPGQLLLFVMIMTFLVNCWAMRTCELYYERG NIEKNSYLEIMWLIAITFLTVGYGDKTPRSYCGRYISIVTGAMGVVTTALLVAIIARQLEQSRPERYVFNFVSRMQVKYR IKTAAANVIKATLRIWILRQYGDEFKREIRKYDDKLKQGLKEIKNAKEEMEHIGEDAVGIVDVIHGVERIGLQLEKKLNR IDYLEKHVTDLQDQFQTIDQKLEDIKGMLLKR |
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