Gene
| Gene Model ID | pfu_aug2.0_133.1_10321 |
|---|---|
| Locus | scaffold133.1 : 98258 ... 153205 : - |
| To GenomeBrowser | scaffold133.1:98258..153205 |
| Genes list of scaffold | scaffold133.1 |
| Synonym | pfu_aug1.0_5975.1_59909 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| small conductance calcium-activated potassium channel | GO:0006813 GO:0015269 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_133.1_10321.t1 | 3 | 1 | SK_channel | 47 | 162 | 6.7e-22 | 77.5 | 2.3e-25 | 6.7e-22 | 77.5 |
| pfu_aug2.0_133.1_10321.t1 | 2 | 1 | Ion_trans_2 | 105 | 135 | 2.6e-15 | 55.8 | 0.28 | 840.0 | -0.3 |
| pfu_aug2.0_133.1_10321.t1 | 2 | 2 | Ion_trans_2 | 250 | 330 | 2.6e-15 | 55.8 | 8.7e-19 | 2.6e-15 | 55.8 |
| pfu_aug2.0_133.1_10321.t1 | 3 | 2 | SK_channel | 307 | 325 | 6.7e-22 | 77.5 | 1.4 | 4200.0 | -2.5 |
| pfu_aug2.0_133.1_10321.t1 | 3 | 3 | SK_channel | 381 | 396 | 6.7e-22 | 77.5 | 2.1 | 6100.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_133.1_10321.t1 | gi|524866473|ref|XP_005090058.1| | PREDICTED: small conductance calcium-activated potassium channel protein-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_133.1_10321.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10321.t1 atggagggtcctggaatcccattggttaaaactgagaatcattacacgcgttacgttagtacggacaatctcattggtag atcaacaagtatggaatccaacacaaaagcagacgaagagaaaacgcatctgggatttcgtctgcgaattcgaaaagagc tcatagggaggcgtactcgtgttgtggacgcttcattccttctcagtctgatcggtattattgctaacgtattcgacaca gaactgaagttttcaggatcgattggagcaaatagctctgtgtccgtagtcctccgtatcattacttccattaccaccgt tttactagtcatgtctgtgattttatacaatctcataggaataaaactacaattgatcacggctggactcgaaaattggt ctttggtgatcaattatagtataatattcaaaacggtaacggaggttatagtctgctcgttccatccgttaccgtacgga gatgttcgtatccctgtgatggtcgtacataaagacgacgaaggcaacccggagtatttgtcacagtatattccagcaaa ttcaatattgtcagtattaatgttttgtaggctgtatatactagggcgattcttggttgttcatagcgatttgttcaggg atacaactgttcaaagtttgggaacacttagtaaggttcgaattaatgctcaatttgtctttaaagcattgatgacgaca cgtccgggcacctgtctgacggccatcttgttgtccactcttataattagtagctggtcgatacgggtatgtgaattcta cacagagccagctgacggtaacggaaattacttacaagcactatggttaacatccgtaacatttctgacattaggttacg gagatgtcgtaccacacagtatttgtggtagaatcattgctataaaaactggacttatgggcgtgggaattatggcgtta tgtgtagcagttctcgcgcgaaaactcgagcagacgagatctgagcgatatgtgcatacctttgttcagcaaatacacat ggacaaactgcatcgtcatgcagcagctgatgtagtcaaacagtcaatgatagtatggaaattgcgtagatcaggctatt cctttcatagtagccggatattgcgtcataggcggaagttgttggacgccattagacgaatgaaccaatcacaattctcg aaatctcagcttcgagactgtgtgattggaacagtagaagtcgcgaagggcgtagctgaaattaatgatgttgcgtatga aataaaggaagatcaagctaacattcaacaaagattggaaaatcttgaaaaacttatgacaaatattcacttccagttgt acgaaatgagagagagcatgagggaaaaagaaaaatctgcaaaccttaaaaagaattga |
|
Protein
| Protein ID | pfu_aug2.0_133.1_10321.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10321.t1 MEGPGIPLVKTENHYTRYVSTDNLIGRSTSMESNTKADEEKTHLGFRLRIRKELIGRRTRVVDASFLLSLIGIIANVFDT ELKFSGSIGANSSVSVVLRIITSITTVLLVMSVILYNLIGIKLQLITAGLENWSLVINYSIIFKTVTEVIVCSFHPLPYG DVRIPVMVVHKDDEGNPEYLSQYIPANSILSVLMFCRLYILGRFLVVHSDLFRDTTVQSLGTLSKVRINAQFVFKALMTT RPGTCLTAILLSTLIISSWSIRVCEFYTEPADGNGNYLQALWLTSVTFLTLGYGDVVPHSICGRIIAIKTGLMGVGIMAL CVAVLARKLEQTRSERYVHTFVQQIHMDKLHRHAAADVVKQSMIVWKLRRSGYSFHSSRILRHRRKLLDAIRRMNQSQFS KSQLRDCVIGTVEVAKGVAEINDVAYEIKEDQANIQQRLENLEKLMTNIHFQLYEMRESMREKEKSANLKKN |
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