Gene
| Gene Model ID | pfu_aug2.0_133.1_10325 |
|---|---|
| Locus | scaffold133.1 : 196844 ... 212223 : - |
| To GenomeBrowser | scaffold133.1:196844..212223 |
| Genes list of scaffold | scaffold133.1 |
| Synonym | pfu_aug1.0_3717.1_01522 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase traf7-like | GO:0005488 GO:0006355 GO:0016881 GO:0031401 GO:0032446 GO:0043231 GO:0044444 GO:0044763 GO:0051716 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_133.1_10325.t2 | 2 | 1 | zf-C3HC4_4 | 25 | 59 | 9.0e-07 | 28.6 | 8.4e-09 | 6.9e-06 | 25.8 |
| pfu_aug2.0_133.1_10325.t2 | 8 | 1 | WD40 | 147 | 176 | 1.5e-37 | 126.1 | 7.3 | 6100.0 | -2.7 |
| pfu_aug2.0_133.1_10325.t2 | 2 | 2 | zf-C3HC4_4 | 230 | 245 | 9.0e-07 | 28.6 | 0.3 | 250.0 | 1.6 |
| pfu_aug2.0_133.1_10325.t2 | 8 | 2 | WD40 | 307 | 342 | 1.5e-37 | 126.1 | 9.0e-11 | 7.4e-08 | 31.9 |
| pfu_aug2.0_133.1_10325.t2 | 8 | 3 | WD40 | 350 | 384 | 1.5e-37 | 126.1 | 8.3e-07 | 0.00068 | 19.4 |
| pfu_aug2.0_133.1_10325.t2 | 8 | 4 | WD40 | 397 | 424 | 1.5e-37 | 126.1 | 0.0011 | 0.87 | 9.5 |
| pfu_aug2.0_133.1_10325.t2 | 8 | 5 | WD40 | 434 | 465 | 1.5e-37 | 126.1 | 1.0e-05 | 0.0085 | 15.9 |
| pfu_aug2.0_133.1_10325.t2 | 8 | 6 | WD40 | 481 | 506 | 1.5e-37 | 126.1 | 0.048 | 39.0 | 4.3 |
| pfu_aug2.0_133.1_10325.t2 | 8 | 7 | WD40 | 512 | 548 | 1.5e-37 | 126.1 | 4.6e-11 | 3.8e-08 | 32.9 |
| pfu_aug2.0_133.1_10325.t2 | 8 | 8 | WD40 | 554 | 587 | 1.5e-37 | 126.1 | 4.1e-06 | 0.0034 | 17.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_133.1_10325.t2 | gi|122114575|ref|NP_001073654.1| | E3 ubiquitin-protein ligase TRAF7 [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_133.1_10325.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10325.t1 atgctccagcctcatgaatcagaagatgagactcccgtggtattagtgggggagctgagcccacatttaaggtgccctat ctgtgggaagttgtacagagatcctgtcattaacattaagtgcggtcataccttctgtaggagatgcacgttggccagta ctcattgcccggaggatggcgaacactgcaatacgtcacagctagtagtgaataggctggttgttggacaggtggatgat atattaatccattgtaagcacggagttacaaagcagaatggagtgtacgttcctgatcctactggatgccaagtaacagt acaaataggtaaaagagaggaacatgaagaaacctgcgagtttgctccgattgcatgtccgaacatggtgcattgtggga aatttagatcctctgagatggagcagcatttacaagtgtgtgcattccacccatgttcacacaaagacaaaggctgtgaa tatatgggacgacaagatgatattaaggaccatttgttgtcttgtggatacagaggcctctccaaaagtgtcagcttgtc tgacttcaactctcatacaaggttgttggaggaacagaacagagatttacgagaaactgtctcattactaacacagaggg tagaaatactggaaggacagaaaaactcagtggaatccaaactagacacatgtataagcaccatacagagcttgcagaag aagcaggagtccctgcatttacttgtagaacagctaatgacgacgagaaaccgacgatctatggggtctccaggcagctc ggctgaggtcgtcatcagtccaaggtcacgtagtagcagctctagtagtctaagtggtatgaaaaagagtccaccatcaa ctgtcaaaatagaaaattggaagatgcctttccagttcaagtgtattggaactctgaggggacataaaaatgttgtttgg tgcctggccactcacaaacagaagctgtacagtgctggagcagatagtgttattaaagtatgggacttagaggccctcag taaggggtgtataaagacaatggaggggcacaagggggtagtgcatacaatgacagtatataaggatctactgattacag caggggatgacctctccatcaggttttggaacctggagaatttagaggaagagaattgtttggagaatgcacatgacaat ctgatcagctccatggtggttacttcagagtttctattcacagcttcattttcactcatcaagatatgggacttgagtaa cctgtcactaaaacacaccatatcagggcttcaccactgggtgagggccatcatccttagtccagaaaaagatttgctgt acagtggatctcacaacactatagacatatgggatgctacagggacgttcaacctcaagggcaaaatatcccatacgttt ggatctgtgtattctttaacacttactccacaatatctaatagctggcacttacaatcgaaatattcaagtctttgacct gtccactcggcagcattttaaaagcctgatgggacatgtagggacggtacagagtttggtcacgtctagttcagggaggt tcttgttctcgtgctcagtggattgtacaatgcagatttggaacctggagaacatgttaccaatacaaacattacaacgt catgaaggcagcgtaaatactctgatattatatggagactgtttactgtctgggtcagaagatcgagaaatcaaggttta catgcatttccaaatgcaaatgggatttggagcgcaaggtgtcacatga |
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| Transcript ID | pfu_aug2.0_133.1_10325.t2 |
| Definition | - |
>pfu_aug2.0_133.1_10325.t2 atgctccagcctcatgaatcagaagatgagactcccgtggtattagtgggggagctgagcccacatttaaggtgccctat ctgtgggaagttgtacagagatcctgtcattaacattaagtgcggtcataccttctgtaggagatgcacgttggccagta ctcattgcccggaggatggcgaacactgcaatacgtcacagctagtagtgaataggctggttgttggacaggtggatgat atattaatccattgtaagcacggagttacaaagcagaatggagtgtacgttcctgatcctactggatgccaagtaacagt acaaataggtaaaagagaggaacatgaagaaacctgcgagtttgctccgattgcatgtccgaacatggtgcattgtggga aatttagatcctctgagatggagcagcatttacaagtgtgtgcattccacccatgttcacacaaagacaaaggctgtgaa tatatgggacgacaagatgatattaaggaccatttgttgtcttgtggatacagaggcctctccaaaagtgtcagcttgtc tgacttcaactctcatacaaggttgttggaggaacagaacagagatttacgagaaactgtctcattactaacacagaggg tagaaatactggaaggacagaaaaactcagtggaatccaaactagacacatgtataagcaccatacagagcttgcagaag aagcaggagtccctgcatttacttgtagaacagctaatgacgacgagaaaccgacgatctatggggtctccaggcagctc ggctgaggtcgtcatcagtccaaggtcacgtagtagcagctctagtagtctaagtggtatgaaaaagagtccaccatcaa ctgtcaaaatagaaaattggaagatgcctttccagttcaagtgtattggaactctgaggggacataaaaatgttgtttgg tgcctggccactcacaaacagaagctgtacagtgctggagcagatagtgttattaaagtatgggacttagaggccctcag taaggggtgtataaagacaatggaggggcacaagggggtagtgcatacaatgacagtatataaggatctactgattacag caggggatgacctctccatcaggttttggaacctggagaatttagaggaagagaattgtttggagaatgcacatgacaat ctgatcagctccatggtggttacttcagagtttctattcacagcttcattttcactcatcaagatatgggacttgagtaa cctgtcactaaaacacaccatatcagggcttcaccactgggtgagggccatcatccttagtccagaaaaagatttgctgt acagtggatctcacaacactatagacatatgggatgctacagggacgttcaacctcaagggcaaaatatcccatacgttt ggatctgtgtattctttaacacttactccacaatatctaatagctggcacctacaacaggagtatacaggtgtttgatat atccaccaggcagcatatctcctctctgaagcagcacgtgggatctatatgttcactagcttcttctccctcgggatgct ttcttttctcttgttcaacagataaatgtgtaaagatttggaacctggagaacatgttaccaatacaaacattacaacgt catgaaggcagcgtaaatactctgatattatatggagactgtttactgtctgggtcagaagatcgagaaatcaaggttta catgcatttccaaatgcaaatgggatttggagcgcaaggtgtcacatga |
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Protein
| Protein ID | pfu_aug2.0_133.1_10325.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10325.t1 MLQPHESEDETPVVLVGELSPHLRCPICGKLYRDPVINIKCGHTFCRRCTLASTHCPEDGEHCNTSQLVVNRLVVGQVDD ILIHCKHGVTKQNGVYVPDPTGCQVTVQIGKREEHEETCEFAPIACPNMVHCGKFRSSEMEQHLQVCAFHPCSHKDKGCE YMGRQDDIKDHLLSCGYRGLSKSVSLSDFNSHTRLLEEQNRDLRETVSLLTQRVEILEGQKNSVESKLDTCISTIQSLQK KQESLHLLVEQLMTTRNRRSMGSPGSSAEVVISPRSRSSSSSSLSGMKKSPPSTVKIENWKMPFQFKCIGTLRGHKNVVW CLATHKQKLYSAGADSVIKVWDLEALSKGCIKTMEGHKGVVHTMTVYKDLLITAGDDLSIRFWNLENLEEENCLENAHDN LISSMVVTSEFLFTASFSLIKIWDLSNLSLKHTISGLHHWVRAIILSPEKDLLYSGSHNTIDIWDATGTFNLKGKISHTF GSVYSLTLTPQYLIAGTYNRNIQVFDLSTRQHFKSLMGHVGTVQSLVTSSSGRFLFSCSVDCTMQIWNLENMLPIQTLQR HEGSVNTLILYGDCLLSGSEDREIKVYMHFQMQMGFGAQGVT |
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| Protein ID | pfu_aug2.0_133.1_10325.t2 |
| Definition | - |
>pfu_aug2.0_133.1_10325.t2 MLQPHESEDETPVVLVGELSPHLRCPICGKLYRDPVINIKCGHTFCRRCTLASTHCPEDGEHCNTSQLVVNRLVVGQVDD ILIHCKHGVTKQNGVYVPDPTGCQVTVQIGKREEHEETCEFAPIACPNMVHCGKFRSSEMEQHLQVCAFHPCSHKDKGCE YMGRQDDIKDHLLSCGYRGLSKSVSLSDFNSHTRLLEEQNRDLRETVSLLTQRVEILEGQKNSVESKLDTCISTIQSLQK KQESLHLLVEQLMTTRNRRSMGSPGSSAEVVISPRSRSSSSSSLSGMKKSPPSTVKIENWKMPFQFKCIGTLRGHKNVVW CLATHKQKLYSAGADSVIKVWDLEALSKGCIKTMEGHKGVVHTMTVYKDLLITAGDDLSIRFWNLENLEEENCLENAHDN LISSMVVTSEFLFTASFSLIKIWDLSNLSLKHTISGLHHWVRAIILSPEKDLLYSGSHNTIDIWDATGTFNLKGKISHTF GSVYSLTLTPQYLIAGTYNRSIQVFDISTRQHISSLKQHVGSICSLASSPSGCFLFSCSTDKCVKIWNLENMLPIQTLQR HEGSVNTLILYGDCLLSGSEDREIKVYMHFQMQMGFGAQGVT |
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