Gene
| Gene Model ID | pfu_aug2.0_133.1_10328 |
|---|---|
| Locus | scaffold133.1 : 276384 ... 299858 : + |
| To GenomeBrowser | scaffold133.1:276384..299858 |
| Genes list of scaffold | scaffold133.1 |
| Synonym | pfu_aug1.0_2208.1_58825 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_133.1_10328.t1 | 2 | 1 | VWA | 30 | 210 | 0.0 | 246.9 | 7.19987e-42 | 2.1e-38 | 131.7 |
| pfu_aug2.0_133.1_10328.t1 | 2 | 1 | VWA_2 | 30 | 191 | 9.3e-29 | 100.7 | 9.3e-17 | 2.8e-13 | 50.3 |
| pfu_aug2.0_133.1_10328.t1 | 3 | 1 | VWA_3 | 30 | 185 | 5.2e-08 | 32.7 | 1.8e-05 | 0.053 | 13.2 |
| pfu_aug2.0_133.1_10328.t1 | 2 | 2 | VWA | 485 | 651 | 0.0 | 246.9 | 3.7e-38 | 1.1e-34 | 119.6 |
| pfu_aug2.0_133.1_10328.t1 | 2 | 2 | VWA_2 | 485 | 646 | 9.3e-29 | 100.7 | 4.3e-16 | 1.3e-12 | 48.2 |
| pfu_aug2.0_133.1_10328.t1 | 3 | 2 | VWA_3 | 485 | 502 | 5.2e-08 | 32.7 | 0.029 | 85.0 | 2.8 |
| pfu_aug2.0_133.1_10328.t1 | 3 | 3 | VWA_3 | 570 | 639 | 5.2e-08 | 32.7 | 9.9e-05 | 0.29 | 10.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_133.1_10328.t1 | gi|499020807|ref|XP_004561183.1| | PREDICTED: collagen alpha-1(XII) chain-like [Maylandia zebra] | 1.0e-28 |
| pfu_aug2.0_133.1_10328.t1 | gi|542227089|ref|XP_005452580.1| | PREDICTED: collagen alpha-1(XII) chain-like [Oreochromis niloticus] | 1.0e-25 |
| pfu_aug2.0_133.1_10328.t1 | gi|524907580|ref|XP_005108906.1| | PREDICTED: uncharacterized protein LOC101853496 isoform X2 [Aplysia californica] | 1.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_133.1_10328.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10328.t1 atgattttcatccacatctacctgctgtaccttgcaaattcgatctcaacatcctcaggcacatattgtgatactgcatt gctctccgatatagtattcctcgtcgacgaaagtggaagtgttagtagaaatacctataataccaatcaaacaaattttg aaaaacaaatggacttcgttgcaacatttatttctggttttaaaataggaaaggatggtgtacagatcggactagtaaca ttctcaactgacgtgaaaattgaatactatcttaacgaatatcatgatttacagactttactgcagaaaacaagtcaagt aggctacacccatcctggtcttacattaacaaatctgggcatggacacagtgagagaaaaggtgttttctttaagtcaag gtgacagaccgaacgcaaaaaatattctgataattataacagatggagaatcaaatctccggacacttactgctatttcg gcaaaacagcttcatgcatctaatgtaacagtgttcagtgtcggaattggtaacaccatcgatgtccaagaacttatatc cattgcgtcggatcctgaaaatgtaatgacagttggtgctttcagtaacctacagggaatcgttgatcatcttcaacaaa agctttgtacagcattatcagggacaccgaaacctactatggtacaaccgatatcaaagtcttcgaccacgtctacgacg gcaacaccaaagcttacaactgtaaagacaacaaaacatacaacaaaatatatgtctacaacggaaacatcaacgcttac aactgtaaagtcacgaccaccttcaacaacaaaatcaatgttaacaatggtaacaaaaaagcctccaatagtaaaatcat tacaacctgcaacatcaaaatcaatatctacaacggcaacaccaaagcttataacagaaaagacatcaaaacctacaaca acgtctacatcggtaaaaccaatgcttacaactagcaaaacattacaacctacaacaactatgttaacgtccacaacggc aacatcaacgttttcaactgtaaaggtctctcagccttcaacatcaaaatcaacgtcaacatcagcaaaaccaatgttca caactgtcaaaacgttacaacctacaacaactaaaccaacgtctacagcctctacaacggcaatatcaaagtttttaact gtaaaggcctttcagccagcaacatccaaatcaacgcctacgaaggcattccaagtatttagaacaaaactaaagcttac atcaatagcaactcaggtgtcaacaacaatgacaacaccaacgtcttcgaaagcaactcagatatctacaagaacatcaa agccaacgacaacacagtcttcaaggacgagaacaccaatgaaaacaattccaaaaccaaccataagagattgcaatgct acattgccatctgatatagtgttcctcgtcgacgaaagtggcagtgttaacggaaatccggcggacataaataacacgaa tttcgaaaaacaaatggacttcgtggcaaccctcatttccggttttaaaataggaaaggatggtatacagatcggacttg taacgttctctactgacgttgtaattgagtactatcttaaccaatatcataatttacagactttacagcagaaaacacga caagtaggctacacccatcctggtcttacttttacgaattatggcttaaacgaagtaaagaataaattgtttacacccat tcgaggtgacaggtcatatgcggccaacattcttgtggtgttaacggatggtgaatctaatctaaagacgccgacagcta tttcagccagtgaagtccatgcctcaaatatcacagtatttgctattggaattggtaataaaacaaacataggagaactt agaatcatagcctctgaaccagaacacgtactcactgtgaaggantag |
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Protein
| Protein ID | pfu_aug2.0_133.1_10328.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10328.t1 MIFIHIYLLYLANSISTSSGTYCDTALLSDIVFLVDESGSVSRNTYNTNQTNFEKQMDFVATFISGFKIGKDGVQIGLVT FSTDVKIEYYLNEYHDLQTLLQKTSQVGYTHPGLTLTNLGMDTVREKVFSLSQGDRPNAKNILIIITDGESNLRTLTAIS AKQLHASNVTVFSVGIGNTIDVQELISIASDPENVMTVGAFSNLQGIVDHLQQKLCTALSGTPKPTMVQPISKSSTTSTT ATPKLTTVKTTKHTTKYMSTTETSTLTTVKSRPPSTTKSMLTMVTKKPPIVKSLQPATSKSISTTATPKLITEKTSKPTT TSTSVKPMLTTSKTLQPTTTMLTSTTATSTFSTVKVSQPSTSKSTSTSAKPMFTTVKTLQPTTTKPTSTASTTAISKFLT VKAFQPATSKSTPTKAFQVFRTKLKLTSIATQVSTTMTTPTSSKATQISTRTSKPTTTQSSRTRTPMKTIPKPTIRDCNA TLPSDIVFLVDESGSVNGNPADINNTNFEKQMDFVATLISGFKIGKDGIQIGLVTFSTDVVIEYYLNQYHNLQTLQQKTR QVGYTHPGLTFTNYGLNEVKNKLFTPIRGDRSYAANILVVLTDGESNLKTPTAISASEVHASNITVFAIGIGNKTNIGEL RIIASEPEHVLTVKX |
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