Gene
| Gene Model ID | pfu_aug2.0_133.1_10332 |
|---|---|
| Locus | scaffold133.1 : 354724 ... 361980 : - |
| To GenomeBrowser | scaffold133.1:354724..361980 |
| Genes list of scaffold | scaffold133.1 |
| Synonym | pfu_aug1.0_1286.1_36923 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| apolipoprotein d | GO:0044763 GO:0048523 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_133.1_10332.t1 | 1 | 1 | Lipocalin_2 | 34 | 179 | 3.2e-24 | 85.3 | 1.1e-27 | 4.2e-24 | 84.9 |
| pfu_aug2.0_133.1_10332.t1 | 1 | 1 | Lipocalin | 40 | 180 | 4.1e-16 | 59.2 | 1.6e-19 | 5.8e-16 | 58.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_133.1_10332.t1 | gi|260821521|ref|XP_002606081.1| | hypothetical protein BRAFLDRAFT_125104 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_133.1_10332.t1 | gi|260821525|ref|XP_002606083.1| | hypothetical protein BRAFLDRAFT_125106 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_133.1_10332.t1 | gi|291241282|ref|XP_002740542.1| | PREDICTED: apolipoprotein D-like [Saccoglossus kowalevskii] | 4.06377e-44 |
| pfu_aug2.0_133.1_10332.t1 | gi|291241280|ref|XP_002740540.1| | PREDICTED: apolipoprotein D-like [Saccoglossus kowalevskii] | 9.94922e-44 |
| pfu_aug2.0_133.1_10332.t1 | gi|291241290|ref|XP_002740546.1| | PREDICTED: apolipoprotein D-like [Saccoglossus kowalevskii] | 5.00264e-43 |
Transcript
| Transcript ID | pfu_aug2.0_133.1_10332.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10332.t1 atgttcaaaattttggtgttaatttctttgatatccgtatgttctgcgcaggtattcagcaggggaagttgtccaaacgt acaagtaaaggctgattttaatgtaacacagtatctaggatcatggtatgagatatacaagtttccagcgtggtttgaaa acgatcagaaatgtgttacagcgaactacacgttactgcctaatggtcatatcagagtggacaataaaggaatttcaaaa acagaaggaatagtagaagaagctattgctgatgcatacatcccagacgagaaggtccctgcaaagatattagtcaaatt tccttcagctcccatagccgccgattactgggtacttgacacagactatacgaattacacgctgatttattcctgcctga acatatttggaatcgaaaaaattgagtttggttggattctcagcaggaagtcaacccttgacagcgctatttcaaccaaa cttcaatcaatattgaaaggatacaaagtcgacacggataagcttatttttcaggatcagtcttgcaaatga |
|
Protein
| Protein ID | pfu_aug2.0_133.1_10332.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_133.1_10332.t1 MFKILVLISLISVCSAQVFSRGSCPNVQVKADFNVTQYLGSWYEIYKFPAWFENDQKCVTANYTLLPNGHIRVDNKGISK TEGIVEEAIADAYIPDEKVPAKILVKFPSAPIAADYWVLDTDYTNYTLIYSCLNIFGIEKIEFGWILSRKSTLDSAISTK LQSILKGYKVDTDKLIFQDQSCK |
|