Gene
| Gene Model ID | pfu_aug2.0_1331.1_04970 |
|---|---|
| Locus | scaffold1331.1 : 3479 ... 39652 : + |
| To GenomeBrowser | scaffold1331.1:3479..39652 |
| Genes list of scaffold | scaffold1331.1 |
| Synonym | pfu_aug1.0_2894.1_30273 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna topoisomerase 2- partial | GO:0000792 GO:0001764 GO:0003682 GO:0003918 GO:0005080 GO:0005524 GO:0005654 GO:0005730 GO:0005829 GO:0006265 GO:0007412 GO:0008022 GO:0008301 GO:0010842 GO:0030900 GO:0031290 GO:0042826 GO:0046982 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1331.1_04970.t1 | 2 | 1 | HATPase_c | 109 | 203 | 1.2e-06 | 28.2 | 7.5e-09 | 2.8e-05 | 23.8 |
| pfu_aug2.0_1331.1_04970.t1 | 1 | 1 | DNA_gyraseB | 290 | 449 | 1.4e-36 | 125.2 | 1.1e-39 | 4.2e-36 | 123.7 |
| pfu_aug2.0_1331.1_04970.t1 | 1 | 1 | Toprim | 480 | 590 | 4.4e-13 | 49.0 | 5.6e-16 | 2.1e-12 | 46.9 |
| pfu_aug2.0_1331.1_04970.t1 | 2 | 1 | DNA_topoisoIV | 603 | 921 | 0.0 | 364.7 | 0.0 | 0.0 | 295.0 |
| pfu_aug2.0_1331.1_04970.t1 | 2 | 2 | HATPase_c | 891 | 930 | 1.2e-06 | 28.2 | 0.11 | 420.0 | 0.6 |
| pfu_aug2.0_1331.1_04970.t1 | 2 | 2 | DNA_topoisoIV | 934 | 1109 | 0.0 | 364.7 | 2.7e-23 | 1.0e-19 | 70.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1331.1_04970.t1 | gi|524900220|ref|XP_005106531.1| | PREDICTED: DNA topoisomerase 2-beta-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1331.1_04970.t1 | gi|524900222|ref|XP_005106532.1| | PREDICTED: DNA topoisomerase 2-beta-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1331.1_04970.t1 | gi|676496114|ref|XP_009067108.1| | hypothetical protein LOTGIDRAFT_223462, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1331.1_04970.t1 | gi|111305596|gb|AAI21351.1| | LOC779457 protein [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_1331.1_04970.t1 | gi|705672474|ref|XP_010115590.1| | PREDICTED: DNA topoisomerase 2-beta, partial [Chlamydotis macqueenii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1331.1_04970.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1331.1_04970.t1 atggctcaagcgacgctcgaatatgaggccctgtttgacaacatgaatgcaggagctggtgacggggagaaaaaggtgaa gaagtccaagaaagccaataaagatgaaaacacggacatcgtacatataccgtctgccgaggggcagggtaaaggcacca ataaacggctgtccatcgagagaatctaccagaaaaagtctcagctagagcatatacttctacgcccagactcttatatc gggtcaacggaaaaagtcacacagcccatgtgggtttttgacacggatgaggagcgtatggttttgagagacatcacctt cgtaccaggcctgtacaagatatttgatgaaattttagtgaatgcctcagataacaagcagagagatccgaacatgtcca ccatcaaaatcgacatcgatcctgaaaacaataaaatcaagatctggaacaatgggcgtggaatcccggtagtggaacat aaaacggagaaaatgttcgtgcctactatgatctttggtcacctactgacctccagtaactatgacgatacagaaaagaa agtcactgccaagttatgtaacatcttcagtacaaagttcatagtggagacatcctcgatagattataaaagggctttca aacagacatggattgataacatgggtaaaacaaaggaacccaccatcactgattccaagaatgacgatttcacgtctatt actttctacccggacttggccaaattcaagatggagactctcgacaaagacacggttgatttgttcactcgtcgtgcata tgacattgctgcagcttccagaggtgtcaaagtgtttctgaatgggaaaaagctggctgtaaagagtttcaaagactatg tgaacctatacatcaaggacaagactgacgataacggaatgcccctaaccctcgtacacgagatggctaacgatagatgg gaggtagccgttactctcagtgataaaggattccaacaagtcagctttgtaaacagtatagccactacgaagggaggacg tcatgttgactatgtgacagaccaggtggtcaccaaactcattgacattgtgaagaagaaaaataaagggggcgtcgcca taaaaccattccagattaagaatcacatgtggatttttgtgaactgcctgattgagaacccgacgtttgactcccagact aaggagaacatgacactgcaggccaaaagtttcggttctaaatgtgctctgactgaaaaatatgttactcaggtcagtaa atgtggaattgttgaaagcattctaagttggatgaaattcaaggctcaagcccagctgaataagaaatttagcagctcca agcattctaaactcaagggtattccaaaattagacgatgcaaacgatgcaggaaccagaaattctcgggagtgtaccctg atactgacagagggagattcagccaagtcgttggctgtagcaggactgggtgtggtggggagggaccgatttggagtgtt ccccctcaagggtaaagtgctcaacgtcagggaagctacacacaaacagattatggacaatgctgaaatcaacaacatcg tcaagataatgggactccagtttaaggagaaatacaacgaccacgatgctttaaaatctctgcgctacggcaaactgatg ataatgacagatcaggaccaggatgggtcacatatcaaggggcttctcatcaactttatacaccacttctggccgaatct actcaagtttaatgtcgtggaagaatttatcactccgatcgtaaaggcttctctcatgggaacgatcatcaacttggctc agaacttcattggttctaacaacttgaacgtcctgcagccgattggtcagtttggtacgcggttacatggaggaaaagac gcagctagtccccgttacatcttcacagcactgagtcccctagccagagtgctgttcaacattcacgatgacccgttact ggtgtataactatgacgacaatcttaaggtggaaccagagtggtacattcccataattcccatggttctggtgaacgggg ctgacggaatcggtaccggctggagtaccaagatacccaaccacgacgtacgggaaattgtcaacaatctgaaacgcatg ttagacggattggacccactacctttgaatcccagttataagcacttcaagggcacaatagaagaactgagtgacaataa atttatcgtaaatggagaagtgtcgattatagacgatcagacgatagaaatcacggagctgccgatcaagacatggacgc aggcgtacaaggaagaggtgctagagccaatgcttcacgggacggacaaacagccggccacgatcacagactatcgtgaa taccatacagattccacagtcaagtttgtagtcaagatgacccccgagaagttatcacaaatagaacagacgggactcca taaggtgttcaaaattcagtcttcactcacaacaagttctatggtgctatttgaccatctgggatgtatcaagaagtaca acaatgctatggaaatcatgcgggagtttttcgatgttcgtctccagtattaccataagaggaaagattacctcgaggga ctcttgacggcagagagcaatcgactggagaacatagcacgctttattatggagaagattgagggaactattaccattga gaacaagccaaggaaggagttgattcagatgctggttagacgcggctacgactctgatcccctcaaacgctggaaggaat tacagttcaaagacaaggtgctatttgaccatctgggatgtatcaagaagtacaacaatgctatggaaatcatgcgggag tttttcgatgttcgtctccagtattaccataagaggaaagattacctcgagggactcttgacggcagagagcaatcgact ggagaatatagcacggtttatcatggagaagattgaaggaactattactattgagaacaagccgaggaaggagttgatac agatgctggttagacgcggctacgactctgatcccctcaaacgctggaaggaactacagttcaaagacaaggacttagat gaggatgaggacaatgaggatgatgatgctatgagtgatgcctccggatcatcgggaccagactttaactacattctcag taatccactgtggtgtctgacaaaagagaagaaagatcagctactgaagcagagagatgaaaagcgtcaggagctagaaa tattgaagaagaaatctccagaggacttgtggctggaagatttggaccaattcatggctttattagaggaaacggagcag caggagagagaagatgataacgccaatatgaacaagacggccaagatcaagggcaaggtcaaatctaggaagatcctcgc ccaggagactatgccgtcacctgttggtaggagggtcgtaccgcgagtcgacacggcaatgaggcagaaagcggagcaag ctcagaaaaaaatcaacaaggacaaaataaagaaagaagggaagaatcttctcgatttctttggtaaagaagaaccagag gacgatccagaacccatgagtttggctgatcgactgaaggaaaaaacaggaattacctcccctactgccatttctaaagc ggtcagtaatggtgatgctaaacctgaggagaaaaagaagcgagctccaagggtgaagaaagagagcggttctccaagga agaaaggtaaaggaggtaaagggaagaagaagtcaccgtggtcggactcggagggctctgatggtaaaatgtctgactcg gacatggacatggacggcagttttatggagacggtacaaccgaaagtagacagaggtcctcgtagggcgacagccaagaa aataaactatagtttcaactcggatgatgaggaggcagtgcagtcagatagtgataacaatgacttccagccgacaaact ttgatgagataaatagcgggccggcccagatctccgatgctggcagtgatattgactcccctgttaaaactgtaccaaag aaagctgcaaagtcggctatagaattcattccatcctcagatgacgaggaaaaggaatctcaagaatctgataaactatc ctggctatctccggctaaagagaaaccagaagttactgcaataagtgatgatgacatggacgacatgtttcctaaaacca caaaaccggccaaggaaaaaccggcagcaaaaccagccaagaaaccggcagcaaaaagagcaccagccaaaaaagccgat cctaaacaaatgtccatcactactgcaatgacaaaggccaaaacgaacggaaagcgtaaattactgagcaaaaagcctgt tgtcatagattctgacggtgatgatgatgatgatgtcctgataccccctccaagctcctctagtagttctgaaaaagcac cgggagagaaaaagccggcaaaacccaaatctaaagctgttaagcgacctgccaagaagattgacagtgaccttgacctt tcagatgatgagttcgcaccaaaaaagagagctacaaagaagaagaaatcggcaggcagtgatgatgatagttttggatt tggtggtgacgatggagacgaaggcatctcaatacccgcagaaccgagacgtggcgggggacgttctagggctcctgtca agtataactttgacgatgatgatgacgacgatgatgatgacttttaa |
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Protein
| Protein ID | pfu_aug2.0_1331.1_04970.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1331.1_04970.t1 MAQATLEYEALFDNMNAGAGDGEKKVKKSKKANKDENTDIVHIPSAEGQGKGTNKRLSIERIYQKKSQLEHILLRPDSYI GSTEKVTQPMWVFDTDEERMVLRDITFVPGLYKIFDEILVNASDNKQRDPNMSTIKIDIDPENNKIKIWNNGRGIPVVEH KTEKMFVPTMIFGHLLTSSNYDDTEKKVTAKLCNIFSTKFIVETSSIDYKRAFKQTWIDNMGKTKEPTITDSKNDDFTSI TFYPDLAKFKMETLDKDTVDLFTRRAYDIAAASRGVKVFLNGKKLAVKSFKDYVNLYIKDKTDDNGMPLTLVHEMANDRW EVAVTLSDKGFQQVSFVNSIATTKGGRHVDYVTDQVVTKLIDIVKKKNKGGVAIKPFQIKNHMWIFVNCLIENPTFDSQT KENMTLQAKSFGSKCALTEKYVTQVSKCGIVESILSWMKFKAQAQLNKKFSSSKHSKLKGIPKLDDANDAGTRNSRECTL ILTEGDSAKSLAVAGLGVVGRDRFGVFPLKGKVLNVREATHKQIMDNAEINNIVKIMGLQFKEKYNDHDALKSLRYGKLM IMTDQDQDGSHIKGLLINFIHHFWPNLLKFNVVEEFITPIVKASLMGTIINLAQNFIGSNNLNVLQPIGQFGTRLHGGKD AASPRYIFTALSPLARVLFNIHDDPLLVYNYDDNLKVEPEWYIPIIPMVLVNGADGIGTGWSTKIPNHDVREIVNNLKRM LDGLDPLPLNPSYKHFKGTIEELSDNKFIVNGEVSIIDDQTIEITELPIKTWTQAYKEEVLEPMLHGTDKQPATITDYRE YHTDSTVKFVVKMTPEKLSQIEQTGLHKVFKIQSSLTTSSMVLFDHLGCIKKYNNAMEIMREFFDVRLQYYHKRKDYLEG LLTAESNRLENIARFIMEKIEGTITIENKPRKELIQMLVRRGYDSDPLKRWKELQFKDKVLFDHLGCIKKYNNAMEIMRE FFDVRLQYYHKRKDYLEGLLTAESNRLENIARFIMEKIEGTITIENKPRKELIQMLVRRGYDSDPLKRWKELQFKDKDLD EDEDNEDDDAMSDASGSSGPDFNYILSNPLWCLTKEKKDQLLKQRDEKRQELEILKKKSPEDLWLEDLDQFMALLEETEQ QEREDDNANMNKTAKIKGKVKSRKILAQETMPSPVGRRVVPRVDTAMRQKAEQAQKKINKDKIKKEGKNLLDFFGKEEPE DDPEPMSLADRLKEKTGITSPTAISKAVSNGDAKPEEKKKRAPRVKKESGSPRKKGKGGKGKKKSPWSDSEGSDGKMSDS DMDMDGSFMETVQPKVDRGPRRATAKKINYSFNSDDEEAVQSDSDNNDFQPTNFDEINSGPAQISDAGSDIDSPVKTVPK KAAKSAIEFIPSSDDEEKESQESDKLSWLSPAKEKPEVTAISDDDMDDMFPKTTKPAKEKPAAKPAKKPAAKRAPAKKAD PKQMSITTAMTKAKTNGKRKLLSKKPVVIDSDGDDDDDVLIPPPSSSSSSEKAPGEKKPAKPKSKAVKRPAKKIDSDLDL SDDEFAPKKRATKKKKSAGSDDDSFGFGGDDGDEGISIPAEPRRGGGRSRAPVKYNFDDDDDDDDDDF |
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