Gene
| Gene Model ID | pfu_aug2.0_136.1_20296 |
|---|---|
| Locus | scaffold136.1 : 69066 ... 75790 : + |
| To GenomeBrowser | scaffold136.1:69066..75790 |
| Genes list of scaffold | scaffold136.1 |
| Synonym | pfu_aug1.0_27059.1_26343 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_136.1_20296.t1 | 1 | 1 | Rad60-SLD | 139 | 202 | 2.1e-07 | 30.4 | 7.7e-11 | 3.8e-07 | 29.6 |
| pfu_aug2.0_136.1_20296.t1 | 1 | 1 | ubiquitin | 143 | 201 | 5.7e-13 | 48.0 | 1.7e-16 | 8.6e-13 | 47.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_136.1_20296.t1 | gi|676478529|ref|XP_009061457.1| | hypothetical protein LOTGIDRAFT_219753 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_136.1_20296.t1 | gi|524888342|ref|XP_005100742.1| | PREDICTED: ubiquitin domain-containing protein 2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_136.1_20296.t1 | gi|291230712|ref|XP_002735307.1| | PREDICTED: ubiquitin domain-containing protein 2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_136.1_20296.t1 | gi|260793169|ref|XP_002591585.1| | hypothetical protein BRAFLDRAFT_271783 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_136.1_20296.t1 | gi|731455401|ref|XP_010590843.1| | PREDICTED: ubiquitin domain-containing protein 2 isoform X3 [Loxodonta africana] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_136.1_20296.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_136.1_20296.t1 atggtacaagtctctataggaagaaatcagccattaaaaccagagaaaccaaagtggaagagtgaattacctttgaccga gggtcagcttcgttcaaaacgtgatgaattttgggacacagctccagcttttgaaggacgtaaagaaatatgggatgctc taaaagctgcagcatacgctctagagacaggtgaccacagtcttgcccaggctatagtagatggggctaacatatcactc cctcatggaacattactggactgttatgatgagttaggcaatcggtaccagctacctgtgtatgttctcagttctcccac caatctgatagaagaggcaagtgaaagtgacgcaggaggggatacggataatatgtctccgggattagaaatacccatca aattccgactctccaacgccactaaggaccttaaattatacgtcagaacaaccgatactgtaatgaaattaaagaagcga atatgtgatgaaactggaattgaacctacaagacagagatggttttactctggtagaatgttaggtgataaactacgcgt ggaagaagccaagattccgaaaggttacgtggtacagatcatagtatcgccagagaaaacggaagacggcacctga |
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Protein
| Protein ID | pfu_aug2.0_136.1_20296.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_136.1_20296.t1 MVQVSIGRNQPLKPEKPKWKSELPLTEGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYALETGDHSLAQAIVDGANISL PHGTLLDCYDELGNRYQLPVYVLSSPTNLIEEASESDAGGDTDNMSPGLEIPIKFRLSNATKDLKLYVRTTDTVMKLKKR ICDETGIEPTRQRWFYSGRMLGDKLRVEEAKIPKGYVVQIIVSPEKTEDGT |
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