Gene
| Gene Model ID | pfu_aug2.0_137.1_23534 |
|---|---|
| Locus | scaffold137.1 : 1 ... 20425 : - |
| To GenomeBrowser | scaffold137.1:1..20425 |
| Genes list of scaffold | scaffold137.1 |
| Synonym | pfu_aug1.0_8280.1_02576 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| gamma-butyrobetaine dioxygenase | GO:0003824 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_137.1_23534.t1 | 2 | 1 | DUF971 | 39 | 87 | 2.3e-07 | 31.1 | 6.2e-10 | 9.2e-06 | 26.0 |
| pfu_aug2.0_137.1_23534.t1 | 2 | 2 | DUF971 | 102 | 149 | 2.3e-07 | 31.1 | 0.008 | 120.0 | 3.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_137.1_23534.t1 | gi|676429368|ref|XP_009045577.1| | hypothetical protein LOTGIDRAFT_237554 [Lottia gigantea] | 8.0e-21 |
| pfu_aug2.0_137.1_23534.t1 | gi|470452351|ref|XP_004340602.1| | gammabutyrobetaine dioxygenase [Acanthamoeba castellanii str. Neff] | 8.0e-18 |
| pfu_aug2.0_137.1_23534.t1 | gi|504106616|ref|WP_014340602.1| | gamma-butyrobetaine dioxygenase [Pseudomonas fluorescens] | 2.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_137.1_23534.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_137.1_23534.t1 atggatgaattccaatcaggagaagagactgcatttgtcacagatgaagttacaaacattgttaaagagttagcagctac agttcctcgagagccatcagttaccagtacatctgtacaagatggaggcaagaaactgttggttaactgggataatggaa aatcgtcaacattccattctatgtggctgcgattctgttgtccttgtccactatgccgtgattcagccagtaatatgacc tgttacaagattgaagatattccccttgacatgacagtagaggcggctcttctaagaaatgggaaaattggaatcaagtg gattcaagaaaaccatgaagccgaatttgatccgcagtacctggccgaacatagctattcatccgaggacttgtcagtga aacaaacagatgcgaggccagcccctaacataaagaaagaagttgagaccatagactttttggatgtacaaaattcggag gaggcgctttacaaatggttgaagattataaatgaagaaggactttgtatactgaagaatgttccaacagaatataatta catcaagaag |
|
Protein
| Protein ID | pfu_aug2.0_137.1_23534.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_137.1_23534.t1 MDEFQSGEETAFVTDEVTNIVKELAATVPREPSVTSTSVQDGGKKLLVNWDNGKSSTFHSMWLRFCCPCPLCRDSASNMT CYKIEDIPLDMTVEAALLRNGKIGIKWIQENHEAEFDPQYLAEHSYSSEDLSVKQTDARPAPNIKKEVETIDFLDVQNSE EALYKWLKIINEEGLCILKNVPTEYNYIKK |
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