Gene
| Gene Model ID | pfu_aug2.0_137.1_23546 |
|---|---|
| Locus | scaffold137.1 : 311895 ... 320333 : - |
| To GenomeBrowser | scaffold137.1:311895..320333 |
| Genes list of scaffold | scaffold137.1 |
| Synonym | pfu_aug1.0_7867.1_67759 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_137.1_23546.t1 | 3 | 1 | RRM_1 | 163 | 228 | 5.60519e-45 | 151.0 | 5.6e-18 | 2.1e-14 | 52.8 |
| pfu_aug2.0_137.1_23546.t1 | 3 | 1 | RRM_6 | 163 | 226 | 1.4e-32 | 111.5 | 2.4e-12 | 8.8e-09 | 35.2 |
| pfu_aug2.0_137.1_23546.t1 | 3 | 1 | RRM_5 | 177 | 238 | 6.4e-22 | 77.1 | 4.6e-11 | 1.7e-07 | 30.9 |
| pfu_aug2.0_137.1_23546.t1 | 3 | 2 | RRM_1 | 244 | 307 | 5.60519e-45 | 151.0 | 9.4e-13 | 3.5e-09 | 36.1 |
| pfu_aug2.0_137.1_23546.t1 | 3 | 2 | RRM_6 | 244 | 306 | 1.4e-32 | 111.5 | 1.3e-11 | 4.9e-08 | 32.8 |
| pfu_aug2.0_137.1_23546.t1 | 3 | 2 | RRM_5 | 283 | 307 | 6.4e-22 | 77.1 | 1.4e-06 | 0.0054 | 16.5 |
| pfu_aug2.0_137.1_23546.t1 | 3 | 3 | RRM_1 | 340 | 400 | 5.60519e-45 | 151.0 | 5.1e-20 | 1.9e-16 | 59.4 |
| pfu_aug2.0_137.1_23546.t1 | 3 | 3 | RRM_6 | 340 | 397 | 1.4e-32 | 111.5 | 1.1e-13 | 3.9e-10 | 39.5 |
| pfu_aug2.0_137.1_23546.t1 | 3 | 3 | RRM_5 | 355 | 404 | 6.4e-22 | 77.1 | 1.5e-09 | 5.6e-06 | 26.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_137.1_23546.t1 | gi|524883760|ref|XP_005098506.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_137.1_23546.t1 | gi|524883762|ref|XP_005098507.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_137.1_23546.t1 | gi|642914987|ref|XP_008190470.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_137.1_23546.t1 | gi|642914993|ref|XP_008190474.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_137.1_23546.t1 | gi|759077326|ref|XP_011348427.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X7 [Cerapachys biroi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_137.1_23546.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_137.1_23546.t1 atggcacagaatggaataatggagcaagtgaaaacagaaattaaaacagaagaagacatggaaacgaacggccaaacaga ggactttcaaaaattgacagaatatggaattaatattaaagttgcaaatgaacttgtcaaaatttatgaatcgggtaaat tagcacatgcagatctggatgagagagcactggatgcactgaaggaactgaatgcagatgatgctatagcagtactgaaa cagttttgtgagagcagtctagaacatgtgggaaataaaagtgcattcctttgtggtatgatgaagacctacagacaaaa caagaaacatggtgctaatgcgcaggttgctaaaggacccgatgaggccaaattaaaggagattttggacagaaccggtt actcactagatgtgacaacgggacagagaaagtatggtggtccacccccgggagaagatgagagaaatgcaccatcagga tcagaggtcttctgtggaaaaattcccaaagatgtctttgaagacgaactgatacctttgtttgaaaaatgtggaaagat atgggacttgcggcttatgatggaccccatgacaggcttcaataggggctattgttttatcacattttgtgacaagcctg gtgcattagaagctgtgaaacagcttgacaactatcaaatcaaacctggaaagtccattaaagtgaacatctctgtagca aaccaaaggttgtttgttggaaacatccctaagagcaaatctaaagatgagattatggaagaattttctaaaaagacaga ggatttgactgatgtcataatatacagatctgccgagaaagagaatcagaaaaatcgtggatttgccttcctggagtacg agtctcacaaagctgcttccactgccaaacgcaagttgtcctctggtaggaccaaagtttggggttgtgatgtaatcgta gattgggccgatcccatcgacgatcccgacagcgacacaatgtcaaaggtcaaagttctgtatgtgaggaatctgacatc ggatgtgactgaagacacattaaaggaaaagtttggtgaatatggtaaagtggaacgtgtcaagaaaataaaagactatg gattcatacattttgaagaaagggatgatgcagtgaaagccatggagggaatgaatggacagaaactaggcaagttagaa atggaagtatcactcgccaaacctccatcagagaacaagaaaaaagaacagaggaaacgtgaccaggagcgtcgtcaaat gatgatggcaatgggaatgggaggtcccagatatgggtatgatgactactatgggccacctatgatgagaggaggtggta tgccacctatgagaggtggaggaggaggaggtggaatgaggccccggatgccaccaccacctgatttctacgacgactat tatggctatgatgactttgactactacggtggatatgctccccctataccacgaggcagaggaggtcgcatgcccccacc accaatgcgaggtcgaggaggggcgcccccaccacttcgtggtggtcctagaggtggtgctgtagccagaggatcaagag gagccatgcggggagcgaggggtgctgccgtcaggggtcgagggatgcctgcagggggtaatgtatctaaatctcctgca gcaatgcaacgcggtggtaaaaggaaagcaggcggagatatgaatcaaacaaactctaaaaaacgtaatatgtcggacaa ttggggagcgcaacccatcgcccaacaacctcttgatcaatcggggtatggtggtggaggaggatataatgattcacaat ggtaccaagattcatttgggcaaaattggggttaa |
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Protein
| Protein ID | pfu_aug2.0_137.1_23546.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_137.1_23546.t1 MAQNGIMEQVKTEIKTEEDMETNGQTEDFQKLTEYGINIKVANELVKIYESGKLAHADLDERALDALKELNADDAIAVLK QFCESSLEHVGNKSAFLCGMMKTYRQNKKHGANAQVAKGPDEAKLKEILDRTGYSLDVTTGQRKYGGPPPGEDERNAPSG SEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPMTGFNRGYCFITFCDKPGALEAVKQLDNYQIKPGKSIKVNISVA NQRLFVGNIPKSKSKDEIMEEFSKKTEDLTDVIIYRSAEKENQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGCDVIV DWADPIDDPDSDTMSKVKVLYVRNLTSDVTEDTLKEKFGEYGKVERVKKIKDYGFIHFEERDDAVKAMEGMNGQKLGKLE MEVSLAKPPSENKKKEQRKRDQERRQMMMAMGMGGPRYGYDDYYGPPMMRGGGMPPMRGGGGGGGMRPRMPPPPDFYDDY YGYDDFDYYGGYAPPIPRGRGGRMPPPPMRGRGGAPPPLRGGPRGGAVARGSRGAMRGARGAAVRGRGMPAGGNVSKSPA AMQRGGKRKAGGDMNQTNSKKRNMSDNWGAQPIAQQPLDQSGYGGGGGYNDSQWYQDSFGQNWG |
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