Gene
| Gene Model ID | pfu_aug2.0_137.1_23550 |
|---|---|
| Locus | scaffold137.1 : 355148 ... 368521 : + |
| To GenomeBrowser | scaffold137.1:355148..368521 |
| Genes list of scaffold | scaffold137.1 |
| Synonym | pfu_aug1.0_1970.1_66165 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mitochondrial ribosomal protein isoform a | GO:0005840 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_137.1_23550.t1 | 1 | 1 | Ribosomal_L23 | 66 | 139 | 4.0e-10 | 39.4 | 4.9e-14 | 7.3e-10 | 38.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_137.1_23550.t1 | gi|676461426|ref|XP_009055940.1| | hypothetical protein LOTGIDRAFT_119560 [Lottia gigantea] | 9.0e-30 |
| pfu_aug2.0_137.1_23550.t1 | gi|752889615|ref|XP_011262765.1| | PREDICTED: 39S ribosomal protein L23, mitochondrial, partial [Camponotus floridanus] | 2.0e-27 |
| pfu_aug2.0_137.1_23550.t1 | gi|195377279|ref|XP_002047418.1| | GJ11942 [Drosophila virilis] | 2.0e-26 |
| pfu_aug2.0_137.1_23550.t1 | gi|17647675|ref|NP_523889.1| | mitochondrial ribosomal protein L23, isoform A [Drosophila melanogaster] | 5.0e-26 |
| pfu_aug2.0_137.1_23550.t1 | gi|195336876|ref|XP_002035059.1| | GM14124 [Drosophila sechellia] | 6.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_137.1_23550.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_137.1_23550.t1 atgagaattccggcatactatatgaaaaatgcatttcacaaacttgatcctaaacagttcagaccagtattagataaaac accactttgggaaaggccaatacctaagtacccagtatataaagatggtggacctcagactcgagtattcctctgtcatt tctggatgaagatgctcaaaccaaacaggagacaagctaaagatgtagtcaattttgaagttcatccccaaatgagtaaa tttgatatcaaacaatacctagaaaagctgtaccaggtatcagttctacatgtctcaacaaaactagcccctggaacgcc agtagaaaaagaaggagcaaagggaagtaaatattattctcaccagcgacctgacagacggctagcctatgttacattgg gtcgaggtcaaacctttgaatttcctgaccttttcaaagacaaagagaaattacaacacacggcagatcaaaatcagtct gatgaagaggcaatngacctatcttttccgcttgggtgcacatgttggaaagatgtgggtatcaatgttaagaagttttt tttcttatcttaa |
|
Protein
| Protein ID | pfu_aug2.0_137.1_23550.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_137.1_23550.t1 MRIPAYYMKNAFHKLDPKQFRPVLDKTPLWERPIPKYPVYKDGGPQTRVFLCHFWMKMLKPNRRQAKDVVNFEVHPQMSK FDIKQYLEKLYQVSVLHVSTKLAPGTPVEKEGAKGSKYYSHQRPDRRLAYVTLGRGQTFEFPDLFKDKEKLQHTADQNQS DEEAXDLSFPLGCTCWKDVGINVKKFFFLS |
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