Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_137.1_23556
Locus scaffold137.1 : 436011 ... 470267 : -
To GenomeBrowser scaffold137.1:436011..470267
Genes list of scaffold scaffold137.1
Synonym pfu_aug1.0_11019.1_60845

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_137.1_23556.t1 2 1 Peptidase_M24 395 487 2.0e-22 79.8 7.4e-12 3.7e-08 33.2
pfu_aug2.0_137.1_23556.t1 2 2 Peptidase_M24 494 576 2.0e-22 79.8 2.5e-15 1.2e-11 44.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_137.1_23556.t1 gi|524882136|ref|XP_005097713.1| PREDICTED: xaa-Pro aminopeptidase 1-like [Aplysia californica] 0.0
pfu_aug2.0_137.1_23556.t1 gi|676475183|ref|XP_009060390.1| hypothetical protein LOTGIDRAFT_177452 [Lottia gigantea] 0.0

Transcript
Transcript IDpfu_aug2.0_137.1_23556.t1
Definition-
>pfu_aug2.0_137.1_23556.t1
atgtgccctcgggacttcttgtccaccagcagtgatactcaccgncgactgttgagaggacattttgatagagaacgtat
agacgcttatatagtaccgtcagaagatgctcatcagagtgaatatccctctgattatgaccttcgccgtggttacatct
ctggactttcagggtcagccggtgttgaaggagtaccaacaataacggagtggttgattgcaatgcttggacctataaat
ggtacagttggtgctgacccgttccttgtgagaagcagtaagtgggtgagcatggaagatgatttgaagaaaaagagtgt
ctcaatgcagcagataactccagatcttgtagacagagactggacaacagccaatggccgtcctcctcagcctaatacac
caatcaatgctttacctttacagtttgcaggcaagacatggcaagacaaagttcgagaagttcaagatgaaatggcggat
ttcggggcagattccctgattgtatcaggattggacgaaactgcatgtgttgaaggagtaccaacaataacggagtggtt
gattgcaatgcttggacctataaatggtacagttggtgctgacccgttccttgtgagaagcagtaagtgggtgagcatgg
aagatgatttgaagaaaaagagtgtctcaatgcagcagataactccagatcttgtagacagagactggacaacagccaat
ggccgtcctcctcagcctaatacaccaatcaatgctttacctttacagtttgcagggatcttcaatcttcgagctgcgga
cattcaatacaatccatttttcttgtcatatgtcattattgagagaaacagcaatcacccaatacttttcattaaggacc
atcttacgaaattaagtagtgtacctacagacaatgaaacattgataaatttgatgactcatctaaacaccaatgctgca
ggacagtgtgttagtacagaagttatgtgtgtcaaggtaatggagtataacatttcggtttttgaaagtaaacttaagtc
agtggtgtcccggagtaacatagtttggatatctggttacgcaaactacgccatctatgttaaagttccacagaataaat
tgtttcaagagaaaactccaatagcagtttcaaaagcgcagaagaatcctacagagagagaaggaatgaaaaactcccac
agaagggatgctgtagctctaatatcatttcttgctaagttagagaaagaggtaaaggcaggggagttatggacagaagt
ttctgcagcaaaggaattgaagagatacagggagggtcagctgtacagtagaggactgagttttgggagtatatcaggta
gtggatctaacggtgctatcattcactatgtaccatctaatctgacagacaagaggataacaactgatcaagtctatcta
ctggattctggaggacagtactttgttactttgcggactgcacatggtcgtgatatggacttgttggccagacgtccctt
atgggaggcaggacttatataccgtcacggcacagggcacggcatagggatgtaccttagtgttcatgaaggacctggat
ggatatcattgtcccactcctcatatgaaacagatgaaatgttaaaagaacatcagtgtttttcagatgaacctggctac
tatgaagagggaatgtttggaatgcgtctagagaacatcaatatgataaagaaagtggtcccaaagtataacactgctaa
tgtaaccttccttggatttgaacctattacattagtgccgtatgagcccaatctactacagtatgacttgctggacgatc
aacagtataacactgccaatgtaaccttccttggatttgaacctattacattagtgccgtacgagcccaatctactacag
tatgacttgctggacgatcaacaggtactgataaatatgagtaatcgggagaatgtgaatggaaatctctggcttgcagc
tattgttatcttcactaaaatgacaacattcagtcacttatatcaaaacaatctccgtctcttcttcttactagtaactg
tatgtgccgtattctctcattgtggacaaccacctattccagaatggccagagtcctacaaggcatgtatgcgaatggcc
acagacagagaatttattacggttggatactatgtagacaaacataatcaacgaatgaggctagatagttatggcatccc
aaaggaggacaagtttgcttacactgagacgggagaaccttacgaatacgcatgcgcgcagataggatcaccgctgtatg
ttttcatttaccattacaacatagggaaagagctgaatatattccccatacctgatcctccttacaaacactgttccgtg
caaaatatttccaacactttcccacccagtcctattttggagaatttgatgttcgtagagagaacacatgacaacgtaac
agtatacgaccactggcgatctgagtatttcctgtttacaatggattactttttccatgtcagtaatgggctcccataca
agttgtttgtcaattcggaagagcaccaatttctttccattgagacaggagatcttaatccaaagatattcttaccacca
gaaggcgtggactgttattatgcttaa

Protein
Protein IDpfu_aug2.0_137.1_23556.t1
Definition-
>pfu_aug2.0_137.1_23556.t1
MCPRDFLSTSSDTHXRLLRGHFDRERIDAYIVPSEDAHQSEYPSDYDLRRGYISGLSGSAGVEGVPTITEWLIAMLGPIN
GTVGADPFLVRSSKWVSMEDDLKKKSVSMQQITPDLVDRDWTTANGRPPQPNTPINALPLQFAGKTWQDKVREVQDEMAD
FGADSLIVSGLDETACVEGVPTITEWLIAMLGPINGTVGADPFLVRSSKWVSMEDDLKKKSVSMQQITPDLVDRDWTTAN
GRPPQPNTPINALPLQFAGIFNLRAADIQYNPFFLSYVIIERNSNHPILFIKDHLTKLSSVPTDNETLINLMTHLNTNAA
GQCVSTEVMCVKVMEYNISVFESKLKSVVSRSNIVWISGYANYAIYVKVPQNKLFQEKTPIAVSKAQKNPTEREGMKNSH
RRDAVALISFLAKLEKEVKAGELWTEVSAAKELKRYREGQLYSRGLSFGSISGSGSNGAIIHYVPSNLTDKRITTDQVYL
LDSGGQYFVTLRTAHGRDMDLLARRPLWEAGLIYRHGTGHGIGMYLSVHEGPGWISLSHSSYETDEMLKEHQCFSDEPGY
YEEGMFGMRLENINMIKKVVPKYNTANVTFLGFEPITLVPYEPNLLQYDLLDDQQYNTANVTFLGFEPITLVPYEPNLLQ
YDLLDDQQVLINMSNRENVNGNLWLAAIVIFTKMTTFSHLYQNNLRLFFLLVTVCAVFSHCGQPPIPEWPESYKACMRMA
TDREFITVGYYVDKHNQRMRLDSYGIPKEDKFAYTETGEPYEYACAQIGSPLYVFIYHYNIGKELNIFPIPDPPYKHCSV
QNISNTFPPSPILENLMFVERTHDNVTVYDHWRSEYFLFTMDYFFHVSNGLPYKLFVNSEEHQFLSIETGDLNPKIFLPP
EGVDCYYA

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495