Gene
| Gene Model ID | pfu_aug2.0_1372.1_08340 |
|---|---|
| Locus | scaffold1372.1 : 30416 ... 37823 : + |
| To GenomeBrowser | scaffold1372.1:30416..37823 |
| Genes list of scaffold | scaffold1372.1 |
| Synonym | pfu_aug1.0_30641.1_33762 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase ii subunit rpb4 | GO:0000166 GO:0003899 GO:0005665 GO:0006366 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1372.1_08340.t1 | 1 | 1 | RNA_pol_Rpb4 | 23 | 113 | 7.2e-27 | 93.7 | 5.1e-31 | 7.6e-27 | 93.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1372.1_08340.t1 | gi|260841580|ref|XP_002613990.1| | hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1372.1_08340.t1 | gi|410910710|ref|XP_003968833.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_1372.1_08340.t1 | gi|727041562|ref|XP_010403780.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Corvus cornix cornix] | 0.0 |
| pfu_aug2.0_1372.1_08340.t1 | gi|706150731|ref|XP_010206729.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB4, partial [Colius striatus] | 0.0 |
| pfu_aug2.0_1372.1_08340.t1 | gi|701371515|ref|XP_009991844.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Chaetura pelagica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1372.1_08340.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1372.1_08340.t1 atgccccccttcgaagaagagaggacatataggtttgccgctgtcggtcggtcggtctgtcggaaacaacaaaatgaaag tgctgaagaagaacaggaattatcagaagtttttatgaagacgttaaactacacagggcgattctcaaagttcaaaaata gggaaaccatagctgtggtcagacaggtactgatgaataaaaaacttcataaatttgaaatagcagtgctagccaatctt tgtccagataatgcagaggaggccaagtctctaataccaagcttagaaggaagatttgaagatgatgagcttcagcagat attagaggacatccaaacaaagaggagctttcagtattga |
|
Protein
| Protein ID | pfu_aug2.0_1372.1_08340.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1372.1_08340.t1 MPPFEEERTYRFAAVGRSVCRKQQNESAEEEQELSEVFMKTLNYTGRFSKFKNRETIAVVRQVLMNKKLHKFEIAVLANL CPDNAEEAKSLIPSLEGRFEDDELQQILEDIQTKRSFQY |
|