Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_1376.1_21581
Locus scaffold1376.1 : 145866 ... 146387 : +
To GenomeBrowser scaffold1376.1:145866..146387
Genes list of scaffold scaffold1376.1
Synonym pfu_aug1.0_8149.1_67806

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_1376.1_21581.t1 1 1 C1q 3 105 3.9e-15 55.9 8.5e-19 4.2e-15 55.8
pfu_aug2.0_1376.1_21581.t1 1 1 PA14 4 81 2.1e-06 27.4 5.5e-10 2.7e-06 27.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_1376.1_21581.t1 gi|742169250|ref|XP_010885200.1| PREDICTED: caprin-2 isoform X1 [Esox lucius] 1.0e-06

Transcript
Transcript IDpfu_aug2.0_1376.1_21581.t1
Definition-
>pfu_aug2.0_1376.1_21581.t1
atgaattccaataacggcaactattatgaccgcaccacaggcaagtttaaagttcccagagacggtccttatgtcttcgc
atggaatgtcgttacccaggccaaatacagtttgaacgccgttctgtatgtaaatgaaaagaaagttagtagagcacagg
ctgacggatcgacaggacctcagaacagctctggatctaacaccatagtgttaaatcttaaagaaggtgatttagttaat
cttagatgcggagactggagagatcaggagaagcgtcaattctatggtggtccggtttccacatttgcaggatgggcact
ataa

Protein
Protein IDpfu_aug2.0_1376.1_21581.t1
Definition-
>pfu_aug2.0_1376.1_21581.t1
MNSNNGNYYDRTTGKFKVPRDGPYVFAWNVVTQAKYSLNAVLYVNEKKVSRAQADGSTGPQNSSGSNTIVLNLKEGDLVN
LRCGDWRDQEKRQFYGGPVSTFAGWAL

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495