Gene
| Gene Model ID | pfu_aug2.0_138.1_26911 |
|---|---|
| Locus | scaffold138.1 : 20313 ... 21975 : - |
| To GenomeBrowser | scaffold138.1:20313..21975 |
| Genes list of scaffold | scaffold138.1 |
| Synonym | pfu_aug1.0_914.1_29475 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_138.1_26911.t1 | 1 | 1 | Homeobox | 8 | 59 | 1.9e-11 | 43.3 | 4.9e-15 | 3.7e-11 | 42.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_138.1_26911.t1 | gi|241999336|ref|XP_002434311.1| | lhx3, putative [Ixodes scapularis] | 6.0e-10 |
| pfu_aug2.0_138.1_26911.t1 | gi|755497215|ref|XP_011237333.1| | PREDICTED: LIM/homeobox protein Lhx3 isoform X2 [Mus musculus] | 8.0e-10 |
| pfu_aug2.0_138.1_26911.t1 | gi|512973710|ref|XP_004848947.1| | PREDICTED: LIM/homeobox protein Lhx3 isoform X1 [Heterocephalus glaber] | 1.0e-09 |
| pfu_aug2.0_138.1_26911.t1 | gi|512852995|ref|XP_004887705.1| | 1.0e-09 | |
| pfu_aug2.0_138.1_26911.t1 | gi|544491543|ref|XP_005580499.1| | PREDICTED: LIM/homeobox protein Lhx3 isoform X5 [Macaca fascicularis] | 2.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_138.1_26911.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_138.1_26911.t1 atggatttacgaatgggtgttagcatcacggaaaaccaagctgaaattttgacatctgcattttacgcatgcgcaaatcc aacacgtgacatcaaagacaatcttagtagtcaaactggattggacattcgtgttattcaaaaatggttccggaacaaac gaaaattcgaaagaaaacacaagaagagatccgagtttcataaaacgaaatcgctaatgtacgcgaacaatatattgaaa tctgcgggtcaatcgatttcaagttttacttctaaatctgattggttgacgtcattatttgctgcagactatgtaccccc aaatgttgaacttacgccacatgacatcaaaaatggagaagtgtgtatgccactttcattcattccacataacgaaaatg acagaaactatggcaaccaacaaacaactccaccgaggtggctgccatgtgtttga |
|
Protein
| Protein ID | pfu_aug2.0_138.1_26911.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_138.1_26911.t1 MDLRMGVSITENQAEILTSAFYACANPTRDIKDNLSSQTGLDIRVIQKWFRNKRKFERKHKKRSEFHKTKSLMYANNILK SAGQSISSFTSKSDWLTSLFAADYVPPNVELTPHDIKNGEVCMPLSFIPHNENDRNYGNQQTTPPRWLPCV |
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