Gene
| Gene Model ID | pfu_aug2.0_138.1_26912 |
|---|---|
| Locus | scaffold138.1 : 22075 ... 25115 : - |
| To GenomeBrowser | scaffold138.1:22075..25115 |
| Genes list of scaffold | scaffold138.1 |
| Synonym | pfu_aug1.0_914.1_29475 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_138.1_26912.t1 | 2 | 1 | LIM | 27 | 80 | 5.1e-24 | 84.1 | 2.7e-14 | 1.4e-10 | 41.1 |
| pfu_aug2.0_138.1_26912.t1 | 2 | 2 | LIM | 86 | 142 | 5.1e-24 | 84.1 | 1.0e-16 | 5.1e-13 | 48.8 |
| pfu_aug2.0_138.1_26912.t1 | 1 | 1 | Homeobox | 166 | 217 | 7.2e-11 | 41.5 | 2.7e-14 | 1.3e-10 | 40.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_138.1_26912.t1 | gi|259013380|ref|NP_001158395.1| | lim domain homeobox 3/4 transcription factor [Saccoglossus kowalevskii] | 9.80909e-45 |
| pfu_aug2.0_138.1_26912.t1 | gi|602693935|ref|XP_007459045.1| | PREDICTED: LIM/homeobox protein Lhx3 isoform X2 [Lipotes vexillifer] | 7.9874e-44 |
| pfu_aug2.0_138.1_26912.t1 | gi|426222898|ref|XP_004005617.1| | PREDICTED: LIM/homeobox protein Lhx3 isoform X1 [Ovis aries] | 2.99878e-43 |
| pfu_aug2.0_138.1_26912.t1 | gi|170055943|ref|XP_001863808.1| | lim homeobox protein [Culex quinquefasciatus] | 2.99878e-43 |
| pfu_aug2.0_138.1_26912.t1 | gi|344308350|ref|XP_003422840.1| | PREDICTED: LIM/homeobox protein Lhx3 isoform X2 [Loxodonta africana] | 5.99756e-43 |
Transcript
| Transcript ID | pfu_aug2.0_138.1_26912.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_138.1_26912.t1 atggagccgtcgatatatcacacctcaccgaatgacacagatttgaacggtgatcaatggaaacaaggagcgcctagatg tcaccactgttgcagtcctattcttgacgcgacgatcgttacttccggtgagaagacatggcatcggtcctgcttccggt gtatggaatgtaactgtgagctggatgaggcatgcgtaacggacgggagacaactctactgtagatacgactttgacaga ctgttcagatccccatgtgccagttgtaacatcctaatgcagccttctgagtttgtacgccgtgtctatggcaacctata ccacgaggattgcttcagatgtgtgatatgtaggaggaaacaccaaacaggagagcgtgtttacttgagggacgataata aacttgtctgtcaatgggactatgatagacttaataaaaatgatttgtcgtcagacgaggaagactcttaccaaatggat ttacgaatgggtgttagcatcacggaaaaccaagctgaaattttgacatctgcattttacgcatgcgcaaatccaacacg tgacatcaaagacaatcttagtagtcaaactggattggacattcgtgttattcaaaaatggttccggaacaaacgaaaat tcgaaagaaaacacaagaagagatccgagtttcataaaacgaaatcgctaatgtacgcgaacaatatattgaaatctgcg ggtcaatcgatttcaagttttacttctaaatctgattggttgacgtcattatttgctgcagactatgtacccccaaatgt tgaacttacgccacatgacatcaaaaatggagaagtgtgtatgccactttcattcattccacataacgaaaatgacagaa actatggcaaccaacaaacaactccaccgaggtggctgccatgtgtttga |
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Protein
| Protein ID | pfu_aug2.0_138.1_26912.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_138.1_26912.t1 MEPSIYHTSPNDTDLNGDQWKQGAPRCHHCCSPILDATIVTSGEKTWHRSCFRCMECNCELDEACVTDGRQLYCRYDFDR LFRSPCASCNILMQPSEFVRRVYGNLYHEDCFRCVICRRKHQTGERVYLRDDNKLVCQWDYDRLNKNDLSSDEEDSYQMD LRMGVSITENQAEILTSAFYACANPTRDIKDNLSSQTGLDIRVIQKWFRNKRKFERKHKKRSEFHKTKSLMYANNILKSA GQSISSFTSKSDWLTSLFAADYVPPNVELTPHDIKNGEVCMPLSFIPHNENDRNYGNQQTTPPRWLPCV |
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