Gene
| Gene Model ID | pfu_aug2.0_138.1_26925 |
|---|---|
| Locus | scaffold138.1 : 305021 ... 319200 : + |
| To GenomeBrowser | scaffold138.1:305021..319200 |
| Genes list of scaffold | scaffold138.1 |
| Synonym | pfu_aug1.0_32779.1_19465 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_138.1_26925.t1 | 1 | 1 | RTC | 3 | 288 | 0.0 | 168.0 | 0.0 | 0.0 | 167.4 |
| pfu_aug2.0_138.1_26925.t1 | 1 | 1 | RTC_insert | 138 | 224 | 2.3e-16 | 59.6 | 5.0e-20 | 3.7e-16 | 59.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_138.1_26925.t1 | gi|602626776|ref|XP_007420341.1| | PREDICTED: RNA 3'-terminal phosphate cyclase [Python bivittatus] | 0.0 |
| pfu_aug2.0_138.1_26925.t1 | gi|585646705|ref|XP_006882506.1| | PREDICTED: RNA 3'-terminal phosphate cyclase [Elephantulus edwardii] | 0.0 |
| pfu_aug2.0_138.1_26925.t1 | gi|696988226|ref|XP_009561834.1| | PREDICTED: RNA 3'-terminal phosphate cyclase [Cuculus canorus] | 0.0 |
| pfu_aug2.0_138.1_26925.t1 | gi|704307046|ref|XP_010164744.1| | PREDICTED: RNA 3'-terminal phosphate cyclase, partial [Caprimulgus carolinensis] | 0.0 |
| pfu_aug2.0_138.1_26925.t1 | gi|698392612|ref|XP_009806372.1| | PREDICTED: RNA 3'-terminal phosphate cyclase, partial [Gavia stellata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_138.1_26925.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_138.1_26925.t1 atgaataagccacaacatttgactggattacagctgatcagagacatatgtaatgggaagctggagggaggcgtggtcag ctcatcagagatcaccttcatcccaggaaaggtcaaggctggctcatacacaggggacacaaaaacagcagggagtatct gtttgttgatgcaagctgcccttccgtgttttatatacgctgacggagaagttactctcagattactaggtggcactaac gctgacatggctccacagatagactatgcattaatggttttcaggccatttgctgctaaatttggaatgaattttacagg gagtatactaagaagagggttttatccaaagggaggaggtgaagttcaagtaaaggtatttcctagtaaatgtctgaatg ccgtagatgctacagatcgaggtcaacttaccagagttactggtcaagcttttgtagcgggagttttacctataaaagtt gccagggcaatgtcacatagtgctcaagatgttgtaaggaatctctatccagatgcatccatgcatatcgatgttaaaca agaaacctcagcatctgcatttggaacgggtacaggaatcacaattgtgggagagacaagtacaggatgtatactagctg gatctggactcggcaaaagagatgatgatgcatgtacagtaccatggccatactcagacaatatgacctctgtggaaact gaacatcaattactgtggaaatcagtggtggatataattataatactaatggctctagctaaaggtaaatcccgagtgct ttgtggtcctatgtctctacatacacagactgctatacacgtggctcagctaatgacagaggtactatgtgacatgggac ctttaattttagaccatgtccattga |
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Protein
| Protein ID | pfu_aug2.0_138.1_26925.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_138.1_26925.t1 MNKPQHLTGLQLIRDICNGKLEGGVVSSSEITFIPGKVKAGSYTGDTKTAGSICLLMQAALPCFIYADGEVTLRLLGGTN ADMAPQIDYALMVFRPFAAKFGMNFTGSILRRGFYPKGGGEVQVKVFPSKCLNAVDATDRGQLTRVTGQAFVAGVLPIKV ARAMSHSAQDVVRNLYPDASMHIDVKQETSASAFGTGTGITIVGETSTGCILAGSGLGKRDDDACTVPWPYSDNMTSVET EHQLLWKSVVDIIIILMALAKGKSRVLCGPMSLHTQTAIHVAQLMTEVLCDMGPLILDHVH |
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